| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2777954 = | 47 (0.780) | 3 (0.050) | 3/252 | NT | 6.0% | coding (432/831 nt) | PP_2430 | AraC family transcriptional regulator |
| ? | NC_002947 | 2777997 = | 49 (0.850) | coding (389/831 nt) | PP_2430 | AraC family transcriptional regulator | |||||
AACAGCTGCGCGCGCTGTACGAGCACGCGCCGGGCGACAGCCTGCCCAGCTTTGCCGACACCCTGTGCCACGACGAACGCCTGGCGCGGGCCACCGCCCTGGCCTTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2778105‑2777954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggccCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGG > NC_002947/2777997‑2778144 AACAGCTGCGCGCGCTGTACGAGCACGCGCCGGGCGACAGCCTGCCCAGCTTTGCCGACACCCTGTGCCACGACGAACGCCTGGCGCGGGCCACCGCCCTGGCCTTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACG < 6:340532/149‑1 CAGCTTTGCCGACACCCTGTGCCACGACGAACGCCTGGCGCGGGCCACCGCCCTGGCCTTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAA > 7:216128/1‑101 CAGCTTTGCCGACACCCTGTGCCACGACGAACGCCTGGCGCGGGCCACCGCCCTGGCCTTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAA < 8:216128/101‑1 TTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACGGCCCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCG > 8:187978/1‑149 CCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACGGCCCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGT > 5:226581/1‑149 CGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACGGCCCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTT < 6:226581/149‑1 CGGCCCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAA < 4:168245/149‑1 GCCCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATA < 2:248221/149‑1 CCGGAAGGCCAGGGCGGGGGCCCGCGCCAGGCGTGCGGCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGG < 4:9806/149‑1 AACAGCTGCGCGCGCTGTACGAGCACGCGCCGGGCGACAGCCTGCCCAGCTTTGCCGACACCCTGTGCCACGACGAACGCCTGGCGCGGGCCACCGCCCTGGCCTTCCGGGCCGTGCATGACCAGGACTTGCGCATCGTCAGGCAAACGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2778105‑2777954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggccCGGAAGGCCAGGGCGGTGGCCCGCGCCAGGCGTTCGTCGTGGCACAGGGTGTCGGCAAAGCTGGGCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGG > NC_002947/2777997‑2778144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |