New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3394199	55 (0.910)	4 (0.070)	4/256	NT	6.3%	coding (208/900 nt)	PP_2997	protein CnmA
	?	NC_002947	= 3394244	65 (1.110)					coding (163/900 nt)	PP_2997	protein CnmA

GGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3394049‑3394199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGCTGATAGGGCCGTGCCGCGAGGTGCTGGAATCGCTGCGCCGGCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCT  <  NC_002947/3394244‑3394099                                                                                                                                                                                                                                                                                                           GGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGC                                                                                                                                                      >  7:246537/1‑149   TTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCT                                                                                                                                                     >  7:280861/1‑148                                             ACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCC                                                                                                          >  2:3217/1‑149                                                    GGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGC                                                                                                   <  1:3217/149‑1                                                     GCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGCT                                                                                                  <  8:64703/149‑1                                                           ACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGCTGATAGG                                                                                            <  2:366335/149‑1                                                                                                                                                     CTGTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGCTGATAGGGCCGTGCCGCGAGGTGCTGGAATCGCTGCGCCGGCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCT  <  7:218409/149‑1                                                                                                                                                                                                                                                                                                           GGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3394049‑3394199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTTCGTGCGCACGCCAGGCGGCATGGCCCCTACCCCGCGCGCCGATCAGCTGATAGGGCCGTGCCGCGAGGTGCTGGAATCGCTGCGCCGGCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCT  <  NC_002947/3394244‑3394099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.