New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3473670 =	61 (1.010)	3 (0.050)	3/252	NT	5.2%	coding (438/507 nt)	PP_3086	RNA polymerase sigma‑70 factor
	?	NC_002947	3473712 =	51 (0.890)					coding (396/507 nt)	PP_3086	RNA polymerase sigma‑70 factor

GTCACAGCTGGACGGCCTGACCTACGCCCAAATCGCCGAACAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3473715‑3473670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCC  >  NC_002947/3473712‑3473857                                                                                                                                                                                                  GTCACAGCTGGACGGCCTGACCTACGCCCAAATCGCCGAACAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGG                                              >  8:231906/1‑148    ACAGCTGGACGGCCTGACCTACGCCCAAATCGCCGAACAGCTGTGACAGCAGAAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCAC                                           >  2:339823/1‑148      AGCTGGACGGCCTGACCTACGCCCAAATCGCCGAACAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTC                                        >  7:223262/1‑149                                            CTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCC  >  2:265885/1‑149                                                                                                                                                                                                  GTCACAGCTGGACGGCCTGACCTACGCCCAAATCGCCGAACAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3473715‑3473670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGGCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCC  >  NC_002947/3473712‑3473857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.