| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3473670 = | 61 (1.010) | 3 (0.050) | 3/252 | NT | 5.2% | coding (438/507 nt) | PP_3086 | RNA polymerase sigma‑70 factor |
| ? | NC_002947 | 3473712 = | 51 (0.890) | coding (396/507 nt) | PP_3086 | RNA polymerase sigma‑70 factor | |||||
TCGCCCAGGATCAGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCCGCT > NC_002947/3473567‑3473860 | gtgccttcgccggaaacgcgctggctgatccttgaaaccctgtaccgcatcgacgccatgctgcgcgacatgccggcgcgggtacgtcaggtgtttctgctgtcaCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCtgt > 2:339823‑M1/106‑148 (MQ=255) ccttcgccggaaacgcgctggctgatccttgaaaccctgtaccgcatcgacgccatgctgcgcgacatgccggcgcgggtacgtcaggtgttcctgctgtcaCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGAc > 8:231906‑M1/103‑148 (MQ=255) cccAGGATCAGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGAcagc < 4:94300/149‑1 (MQ=255) cccAGGATCAGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGAcag > 7:196751/1‑148 (MQ=255) ccAGGATCAGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGAcag > 2:330903/1‑147 (MQ=255) aGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAacac < 2:324782/148‑1 (MQ=255) aaTGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTAc > 3:334485/1‑149 (MQ=255) aTGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTAcc > 4:48756/1‑149 (MQ=255) tGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGa > 8:78847/1‑142 (MQ=255) tGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGa < 7:78847/142‑1 (MQ=255) tGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTAccc > 1:26542/1‑149 (MQ=255) aTCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATg < 7:345879/149‑1 (MQ=255) aTCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATg > 3:160268/1‑149 (MQ=255) tCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCAt < 1:166652/147‑1 (MQ=255) tCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGt > 4:279864/1‑149 (MQ=255) tCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCAAGCTGTGACAGCAGGAACACCTGACGTACCAGCGCCGCCATGt > 6:121838/1‑149 (MQ=255) cTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTcgc < 4:160268/149‑1 (MQ=255) tCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACCGAGAACCAGTTAGGCGATTTTGGCCTAAGTAAGGCCGTACAACTTTGAAAGCAGGAACACCAGAAGTAACCCCGCCCGCaattacc > 1:302577/1‑143 (MQ=255) ggcaggcaAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCg > 3:59087/1‑149 (MQ=255) gcaAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGAt < 2:335903/149‑1 (MQ=255) caAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATg < 2:26928/149‑1 (MQ=255) aaGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGAAAGCAGGAACACCTGACGTACCCGCGACGGCATGTCGCGAAGCATG‑GCGTCGATGc > 5:157671/1‑149 (MQ=255) aaGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCACCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGc > 3:229940/1‑149 (MQ=255) aGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGGCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCg < 5:121838/149‑1 (MQ=255) gAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGt < 2:26542/149‑1 (MQ=255) ccGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGT‑CAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAgg < 5:210361/148‑1 (MQ=255) gTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGt < 8:218500/149‑1 (MQ=255) aTGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGGCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAg < 3:116227/149‑1 (MQ=255) tGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATGCGCGTCGATGCGGTACAGGGTTTCAAg < 1:3340/149‑1 (MQ=255) tttcgctGATCACGATCAAGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGAt > 2:263504/7‑149 (MQ=255) gcgcTTGATCGTGATC‑AGCGAACCC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGATTCAAGGAt > 6:98080/1‑147 (MQ=255) gcgcTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATca < 1:330903/149‑1 (MQ=255) gcgcTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGGTTCAAGGAt > 8:102167/1‑147 (MQ=255) gcTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATcagc > 5:193138/1‑149 (MQ=255) tCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGa < 1:203027/117‑1 (MQ=255) tCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGa > 2:203027/1‑117 (MQ=255) cGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAgcgc < 2:302577/148‑1 (MQ=255) tC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTcc < 8:196751/149‑1 (MQ=255) gCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGc < 4:229940/149‑1 (MQ=255) cGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGa < 5:251423/54‑1 (MQ=255) cGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGa > 6:251423/1‑54 (MQ=255) aaCC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAg < 4:334485/149‑1 (MQ=255) gtcacagctggacggcctgacctacgcccaaatcgccgaacagctgTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAgg > 8:231906‑M2/47‑148 (MQ=255) gCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCAcc > 3:153111/1‑149 (MQ=255) acagctggacggcctgacctacgcccaaatcgccgaacagctgTGACAGCAGAAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCAc > 2:339823‑M2/44‑148 (MQ=255) agctggacggcctgacctacgcccaaatcgccgaacagctgTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTc > 7:223262‑M2/42‑149 (MQ=255) ggCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATca > 6:73865/1‑113 (MQ=255) ggCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATca < 5:73865/113‑1 (MQ=255) ggCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCCGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCg > 6:270770/1‑149 (MQ=255) ggCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGc < 4:153111/148‑1 (MQ=255) ggCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCg > 8:124185/1‑149 (MQ=255) ggCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATggg < 3:227640/149‑1 (MQ=255) ggCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATggg < 3:279864/149‑1 (MQ=255) gCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGc < 7:124185/149‑1 (MQ=255) gTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGc < 2:170553/132‑1 (MQ=255) gTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGc > 1:170553/1‑132 (MQ=255) tCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCATGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGcc > 8:166917/1‑149 (MQ=255) aGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTc < 7:102167/149‑1 (MQ=255) ctgTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGccc > 2:265885‑M2/4‑149 (MQ=255) tgACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCCGCt < 6:193138/149‑1 (MQ=255) | TCGCCCAGGATCAGCGGGTCAATGCGCTGCACCATCACTCGATGCTCAGGCAGGCAAGGAATGCCGTACGCATGTCGCGCTTGATCGTGATC‑AGCGAAACC‑TGCAGCTGTTCGGCGATTTGGGCGTAGGTCAGGCCGTCCAGCTGTGACAGCAGGAACACCTGACGTACCCGCGCCGGCATGTCGCGCAGCATG‑GCGTCGATGCGGTACAGGGTTTCAAGGATCAGCCAGCGCGTTTCCGGCGAAGGCACCTCGGGTTGCGGCAAATGGGCGATGGCCTCCAGGTAGGCCCGCT > NC_002947/3473567‑3473860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |