New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3523943	NA (NA)	3 (0.050)	3/252	NT	NA	coding (656/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523969	NA (NA)					coding (682/1533 nt)	PP_3114	transposase

AGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3523790‑3523943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattcaGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCCAGCA  <  NC_002947/3523969‑3523823                                                                                                                                                                                                                                                                                                               AGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTG                                                                                                                                                          <  2:82765/149‑1  GATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGA                                                                                                                                                         <  6:182059/149‑1    TGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGTCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATT                                                                                                                                                       >  2:284182/1‑149    TGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGAT                                                                                                                                                        <  7:271421/148‑1     GATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATT                                                                                                                                                       >  2:235795/1‑148       TCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCA                                                                                                                                                     <  4:183628/148‑1                  ATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCCCCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTC                                                                                                                                                      >  3:301469/1‑136                  ATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTC                                                                                                                                                      <  4:301469/136‑1                          CCCTAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACTGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTTGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATT                                                                                                                                                       <  6:293863/127‑1                          CCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATAAGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATT                                                                                                                                                       >  5:293863/1‑127                                         CATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATC                                                                                                                     >  1:138807/1‑146                                         CATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATC                                                                                                                     <  2:138807/146‑1                                             CTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGC                                                                                                              <  3:50821/149‑1                                                                                                                                                     ctTTCAGCCGCTGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCAT          <  1:189243/143‑1                                                                                                                                                     ctTTCAGCCGCTGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCAT          >  2:189243/3‑145                                                                                                                                                     GATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCC      >  7:143066/1‑149                                                                                                                                                      ATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGC       >  5:221102/1‑147                                                                                                                                                      ATTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGC       >  3:51449/1‑147                                                                                                                                                       TTCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCCAG    >  7:225037/1‑149                                                                                                                                                        TCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGTATATCGATACCGTGACTCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGT                   <  7:307605/133‑1                                                                                                                                                        TCAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAACCGGTGAATCGGCAAGCCGTCAACGTATATGCTGGT                   >  8:307605/1‑133                                                                                                                                                         CAGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCCAGCA  >  3:219231/1‑149                                                                                                                                                          AGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCCAGCA  <  2:250368/148‑1                                                                                                                                                          AGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGC       >  7:301671/1‑143                                                                                                                                                          AGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGC       <  8:301671/143‑1                                                                                                                                                                                                                                                                                                               AGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCACCGCTTCGAAAAAGTGCTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3523790‑3523943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattcaGCAGCGGCTGAAAGTGCTCGCTGCATTGAATCACCCAGCGTGCCAGGGTTTGGCGCGGGATATCGATACCGTGACGCCCCAGCACTTTTTCGAAGCGGTGAAGCGGCAAGCCGTCTACGTATTTGGTGGTCAGCAGCATGGCCAGCA  <  NC_002947/3523969‑3523823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.