New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3523943	NA (NA)	3 (0.050)	3/252	NT	NA	coding (656/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523969	NA (NA)					coding (682/1533 nt)	PP_3114	transposase

CTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGT  >  NC_002947/3523888‑3524036                                                                                  |                                                                    cttgggCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTTCAGgt  <  7:267780/146‑1 (MQ=1)                                                                                  |                                                                    CTGGGGCGTCACGGTATCGATATCCCGCGCCAAACCCTGGCACGCTGGGTGATTCAATGCAGCGAGCACTTTCAGCCGCTGCTGAATCTGATGCGCGAAAGCCTGTTGAAGAGTCGGATCATCCACTGTGATGAAACACGTGTGCAGGT  >  NC_002947/3523888‑3524036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.