New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3604549	57 (0.950)	4 (0.070)	4/252	NT	6.9%	coding (105/900 nt)	PP_3179	LysR family transcriptional regulator
	?	NC_002947	= 3604617	54 (0.940)					coding (37/900 nt)	PP_3179	LysR family transcriptional regulator

GAGAAACGCTGCACCCGCTGCGGTCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3604456‑3604549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCGCAGCGG  <  NC_002947/3604617‑3604470                                                                                                                                                                                                                                                    GAGAAACGCTGCACCCGCTGCGGTCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAAC                                                                                               >  2:45848/1‑149          TGCACCCGCTGCGGTCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCT                                                                                        >  6:150694/1‑147                     CGGTCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATC                                                                           <  5:150694/149‑1                        TCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAAC                                                                        <  1:45848/149‑1                                                                                         ATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCG        >  1:255974/1‑148                                                                                         ATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCG        >  2:92036/1‑148                                                                                         ATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCG                <  5:106396/140‑1                                                                                         ATCGCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCG                >  6:106396/1‑140                                                                                            GCCGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCGCAGC    <  3:126877/149‑1                                                                                              CGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCACCCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCGCAGCGG  <  8:174172/149‑1                                                                                              CGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGATAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCGCAGCGG  >  6:7164/1‑149                                                                                                                                                                                                                                                    GAGAAACGCTGCACCCGCTGCGGTCAGGCGCACCCCGCGCTTGTTGCGCAGAAGAAGGCCGAAACCGAGCTTTTCCTCGAGCCGGTTGATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3604456‑3604549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccGTGGCCGAAGAGCTGCACTTTCACAAGGCCGCACAGCGCCTGCACATGGCGCAACCGCCGCTGAGCCAGGCGATCAACCGGCTCGAGGAAAAGCTCGGTTTCGGCCTTCTTCTGCGCAACAAGCGCGGGGTGCGCCTGACCGCAGCGG  <  NC_002947/3604617‑3604470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.