| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3933865 | 68 (1.130) | 4 (0.070) | 4/256 | NT | 5.9% | coding (1548/1911 nt) | PP_3467 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 3933896 | 61 (1.040) | coding (1517/1911 nt) | PP_3467 | sigma‑54 dependent transcriptional regulator | |||||
GGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3933762‑3933865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCATCCAGGGCCTGCTGGACAAGGCCGATGCGCGTGGCGTAACCCTCGACCCGGCGTTGACCGCGTTGCTCGAAGGCTTCGACTGGCCCGGCAACATCCGTCAGCTGG < NC_002947/3933896‑3933753 GGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCAT > 3:227869/1‑144GGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCAT < 4:227869/144‑1 TTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCATCCA > 5:236864/1‑122 TTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCATCCA < 6:236864/122‑1 CGCCTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCATCCAGGGCCTGCTGGACAAGGCCGATGCGCGTGGCGTAACCCTCGACCCGGCGTTGACCGCGTTGCTCGAAGGCTTCGACTGGCCCGGCAACATCCGTCAGCTGG < 4:158810/148‑1 GGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3933762‑3933865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTGCCGGCCCTGCGTGAACGCGACGACCTGGCGGCGATCATCCAGGGCCTGCTGGACAAGGCCGATGCGCGTGGCGTAACCCTCGACCCGGCGTTGACCGCGTTGCTCGAAGGCTTCGACTGGCCCGGCAACATCCGTCAGCTGG < NC_002947/3933896‑3933753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |