New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4099786	59 (0.980)	3 (0.050)	3/258	NT	5.1%	coding (232/1215 nt)	PP_3607	membrane protein
	?	NC_002947	= 4099874	53 (0.900)					coding (144/1215 nt)	PP_3607	membrane protein

ACACCCGCAGGGGCAACCAGACCAGTGACCGGGTTACCGAACAGGCTGCCAGCTGACAACGCCGGGAAGAACAGCAGCACCGCCAGGGTCAGCATGACCATCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4099680‑4099786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCCTTGGCCTGACGCTGTACCACGCCGCCTTCGGTTTCACCTCAGCCTGGCGGGTGTTTATCAACGAGCGCCGTGGCGCGGGCCTGCGTGCGCAGATGGTCATGCTGACCCTGGCGGTGCTGCTGTTCTTCCCGGCGTTGTCAGCTG  <  NC_002947/4099874‑4099729                                                                                                                                                                                                                                                               ACACCCGCAGGGGCAACCAGACCAGTGACCGGGTTACCGAACAGGCTGCCAGCTGACAACGCCGGGAAGAACAGCAGCACCGCCAGGGTCAGCATGACCATCTGCGCCCTTGGCCTGACGCTGTACCACGCCGCCTTCGGTTTCACCT                                                                                                           >  1:234910/1‑148                                       GAACAGGCTGCCAGCTGACAACGCCGGGAAGAACAGAAGCACCGCCAGGGTCAGCATGACCATCTGCGCCCTTGGCCTGACGCTGTACCACGCCGCCTTCGGTTTCACCTCAGCCTGGCGGGTGTTTATCAACGAGCGCCGTGGCGCGG                                                                    <  4:17042/149‑1                                                        ACAACGCCGGGAAGAACAGCAGCACCGCCAGGGTCAGCATGACCATCTGCGCCCTTGGCCTGACGCTGTACCACGCCGCCTTCGGTTTCACCTCAGCCTGGCGGGTGTTTATCAACGAGCGCCGTGGCGCGGGCCTGCGTGCGCAGA                                                     <  2:234910/147‑1                                                                                                         CGCCCTTGGCCTGACGCTGTACCACCCCGCCATCCGATACACCTCAGCCTGGAGGGTGTTTTTCAACCAGCGCCGTGGCGCGGGCCTGCGTGCGCAGATGGTCATGCTCACCCTGGCGGTGCTCCAGTTCTTCCCGGCGTTGTCAGCTG  >  2:327891/1‑149                                                                                                                                                                                                                                                               ACACCCGCAGGGGCAACCAGACCAGTGACCGGGTTACCGAACAGGCTGCCAGCTGACAACGCCGGGAAGAACAGCAGCACCGCCAGGGTCAGCATGACCATCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4099680‑4099786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCCTTGGCCTGACGCTGTACCACGCCGCCTTCGGTTTCACCTCAGCCTGGCGGGTGTTTATCAACGAGCGCCGTGGCGCGGGCCTGCGTGCGCAGATGGTCATGCTGACCCTGGCGGTGCTGCTGTTCTTCCCGGCGTTGTCAGCTG  <  NC_002947/4099874‑4099729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.