New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4128664 =	65 (1.080)	4 (0.070)	4/252	NT	6.5%	coding (564/879 nt)	PP_3632	LysR family transcriptional regulator
	?	NC_002947	4128697 =	53 (0.920)					coding (531/879 nt)	PP_3632	LysR family transcriptional regulator

CGCTTGCGTGAGGGCACACTGGATATCGGCCTTGTGGCCTTGCCACAGGTGGTCGGCAAAGGGCTGACGGTCACCCCCTGGCGGCGCGACCCGATCCTGGCGTATGTGCCGGCCGACTGGCAGCCACCGGCCAGGATCACCCCGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4128816‑4128664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCCGACCACCTGTGGCAAGGCCACAAGGC  >  NC_002947/4128697‑4128788                                                                                                                                                                                                                                                       CGCTTGCGTGAGGGCACACTGGATATCGGCCTTGTGGCCTTGCCACAGGTGGTCGGCAAAGGGCTGACGGTCACCCCCTGGCGGCGCGACCCGATCCTGGCGTATGTGCCGGCCGACTGGCAGCCACCGGCCAGGATCACCCCGGCCTG                                                                                                  <  6:322556/149‑1                                                                                                                    ACTGGCAGCCACCGGCCAGGATCACCCCGGCCTGGCTGCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCC                            >  1:318166/1‑104                                                                                                                    ACTGGCAGCCACCGGCCAGGATCACCCCGGCCTGGCTGCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCC                            <  2:318166/104‑1                                                                                                                          AGCCACCGGCCAGGATCACCCCGGCCTGGCTGCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCCGACCACCTGTGGCAAGGCCACAAGGC  <  5:376767/124‑1                                                                                                                          AGCCACCGGCCAGGATCACCCCGGCCTGGCTGCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCCGACCACCTGTGGCAAGGCCACAAGGC  >  6:376767/1‑124                                                                                                                                                                                                                                                       CGCTTGCGTGAGGGCACACTGGATATCGGCCTTGTGGCCTTGCCACAGGTGGTCGGCAAAGGGCTGACGGTCACCCCCTGGCGGCGCGACCCGATCCTGGCGTATGTGCCGGCCGACTGGCAGCCACCGGCCAGGATCACCCCGGCCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4128816‑4128664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgCCAGTCGGCCGGCACATACGCCAGGATCGGGTCGCGCCGCCAGGGGGTGACCGTCAGCCCTTTGCCGACCACCTGTGGCAAGGCCACAAGGC  >  NC_002947/4128697‑4128788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.