New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4281528 =	52 (0.860)	3 (0.050)	3/250	NT	5.9%	intergenic (‑105/+613)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4281574 =	46 (0.810)					intergenic (‑151/+567)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

CCGACCATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4281682‑4281528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaatAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACAC  >  NC_002947/4281574‑4281719                                                                                                                                                                                                                                                                                                               CCGACCATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGTGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAG                                                                                                                                                          <  7:178063/149‑1  CGACCATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGG                                                                                                                                                         >  7:311622/1‑149    ACCATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCAAAAGCGGGAGGC                                                                                                                                                        >  4:361014/1‑148      CATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAA                                                                                                                                                     >  1:153149/1‑149      CATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAA                                                                                                                                                     <  2:153149/149‑1                                                                     CAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAA                                                                                                                                                     <  5:9061/86‑1                                                                     CAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAA                                                                                                                                                     >  6:9061/1‑86                                                                                                         CGCTTATTGGCCACCCCGCTAGCCAATTTTGCGCATAAGCGGGAGGCCAATAAGCGGCGCTACAGTAGCGCCATAACCACCCCCCACGCTAGGAGACAGACATGCACAACCGTCTCGAAAGGCCCACACACGCGCCGTCAGCCAATCA                                                   >  4:336816/1‑148                                                                                                                TGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATG                                                                              >  1:218889/1‑114                                                                                                                TGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATG                                                                              <  2:218889/114‑1                                                                                                                                                        CAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACA   >  1:341839/1‑149                                                                                                                                                        CAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACA   >  3:131270/1‑149                                                                                                                                                         AATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACAC  >  8:48047/1‑149                                                                                                                                                                                                                                                                                                               CCGACCATGGCTTGATAGGCTTACGGCGCGTGTTTGGCCCATTCGATACGGTTGTGCATGTCAGTCTCCAAGCGTGTGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4281682‑4281528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaatAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACAC  >  NC_002947/4281574‑4281719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.