New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4633001	49 (0.810)	3 (0.050)	3/256	NT	5.7%	coding (253/561 nt)	pgsA	CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
	?	NC_002947	= 4633026	51 (0.870)					coding (228/561 nt)	pgsA	CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase

GCCAGCATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4632850‑4633001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcCCTGGTGCTGCTGGTGCAGACCCACGCCAACTTCTG  <  NC_002947/4633026‑4632991                                                                                                                                                                                              GCCAGCATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTT                                         <  5:208819/149‑1   CAGCATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGG                                       >  8:47368/1‑149                                       ggcccCCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCCCTGGTGCTGCTGGTGCAGACCCACGCCAACTTCT   <  1:137365/144‑1                                                                                ACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCCCTGGTGCTGCTGGTGCAGACCCACGCCAACTTCTG  >  3:51438/1‑109                                                                                ACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCCCTGGTGCTGCTGGTGCAGACCCACGCCAACTTCTG  <  4:51438/109‑1                                                                                                                                                                                              GCCAGCATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4632850‑4633001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcCCTGGTGCTGCTGGTGCAGACCCACGCCAACTTCTG  <  NC_002947/4633026‑4632991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.