New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 463300149 (0.810)3 (0.050) 3/256 NT 5.7% coding (253/561 nt) pgsA CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
?NC_002947 = 4633026 51 (0.870)coding (228/561 nt) pgsA CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase

CATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACGGC  >  NC_002947/4632855‑4633142
                                                                                                                                                  |                                                                                                                                             
cATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGt                                                                                                                                             <  2:56329/149‑1 (MQ=255)
cATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGt                                                                                                                                             <  2:78858/149‑1 (MQ=255)
 aTCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGt                                                                                                                                             <  8:123998/148‑1 (MQ=255)
      cgccgcAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTgg                                                                                                                                           <  8:89931/145‑1 (MQ=255)
             gTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACcag                                                                                                                                <  7:174708/149‑1 (MQ=255)
              tCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGTGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACcag                                                                                                                                >  4:773/1‑148 (MQ=255)
                  ccACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACcagca                                                                                                                              <  7:47368/146‑1 (MQ=255)
                        aCCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAgg                                                                                                                      <  6:148487/148‑1 (MQ=255)
                        aCCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAgg                                                                                                                      <  5:335978/148‑1 (MQ=255)
                             ggTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACcagc                                                                                                                               <  6:6445/134‑1 (MQ=255)
                             ggTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACcagc                                                                                                                               >  5:6445/1‑134 (MQ=255)
                              gTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTg                                                                                                               <  4:349097/149‑1 (MQ=255)
                                 ggcccccgccacATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCcctggtgctgctggtgcagacccacgccaacttct                                                                                                            <  1:137365‑M1/144‑36 (MQ=255)
                                     acCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCAt                                                                                                        >  6:253033/1‑149 (MQ=255)
                                      ccGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGGTGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATc                                                                                                       <  5:237412/149‑1 (MQ=255)
                                         ccACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGc                                                                                                    <  5:67496/149‑1 (MQ=255)
                                             aTGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGt                                                                                                                                         <  6:225239/108‑1 (MQ=255)
                                             aTGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGt                                                                                                                                         >  5:225239/1‑108 (MQ=255)
                                                                  ggCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCa                                                                                                      >  4:146734/1‑122 (MQ=255)
                                                                  ggCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCa                                                                                                      <  3:146734/122‑1 (MQ=255)
                                                                     cATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGgcgc                                                                        >  7:241186/1‑149 (MQ=255)
                                                                          aCTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCcctggtgctgctggtgcagacccacgccaacttctg                                                                                                           >  3:51438‑M1/1‑73 (MQ=255)
                                                                          aCTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCcctggtgctgctggtgcagacccacgccaacttctg                                                                                                           <  4:51438‑M1/109‑37 (MQ=255)
                                                                          aCTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAAc                                                                   >  7:331173/1‑149 (MQ=255)
                                                                           cTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACg                                                                  <  8:241186/149‑1 (MQ=255)
                                                                            tCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACgg                                                                 >  7:119930/1‑149 (MQ=255)
                                                                            tCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACgg                                                                 >  6:348909/1‑149 (MQ=255)
                                                                              gcgcagcgcaGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGc                                                                <  8:12754/148‑1 (MQ=255)
                                                                                       agACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTctgct                                                      >  2:241814/1‑149 (MQ=255)
                                                                                           accacGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAg                                                  >  5:5475/1‑149 (MQ=255)
                                                                                            ccacGTTCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGTGTCTGCAGCAGCAGCACCAGGGCCAGTGCCACGATCAGCTTGTCGGCCACCGGGTCTAGGAAGGGGCCGAACGGCGTGCTCTGCTGCAGt                                                 <  2:262951/149‑1 (MQ=255)
                                                                                            ccacGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGt                                                 <  1:241814/149‑1 (MQ=255)
                                                                                             cacGATCTCGCGGCCGATGATGACCGCCGCGGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTc                                                >  1:32584/1‑149 (MQ=255)
                                                                                             cacGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTc                                                >  4:146660/1‑149 (MQ=255)
                                                                                             cacGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTc                                                >  6:195828/1‑149 (MQ=255)
                                                                                             cacGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTc                                                >  4:198918/1‑149 (MQ=255)
                                                                                                            gatgatGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGc                                 >  5:367820/1‑149 (MQ=255)
                                                                                                                atgaCCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGt                              <  5:195828/148‑1 (MQ=255)
                                                                                                                   aCCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCa                           <  3:773/148‑1 (MQ=255)
                                                                                                                   aCCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCa                           <  2:32584/148‑1 (MQ=255)
                                                                                                                     cgccgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGc                         >  3:145504/1‑148 (MQ=255)
                                                                                                                     cgccgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGc                         >  5:2977/1‑148 (MQ=255)
                                                                                                                     cgccgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCAGGTAGCCGTc                             <  8:44463/143‑1 (MQ=255)
                                                                                                                     cgccgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCAGGTAGCCGTc                             >  7:44463/1‑143 (MQ=255)
                                                                                                                       ccgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCaa                      >  7:312257/1‑149 (MQ=255)
                                                                                                                        cgccgGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAAt                     >  6:172961/1‑149 (MQ=255)
                                                                                                                                 ggTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCGCCAGGGCCACTGGCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGGGCTCTGCTGCAGTCGACGGGCGAGGTAGCCGTCCAGGGAATCGGTggcgg            >  4:89663/1‑149 (MQ=255)
                                                                                                                                   tCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTggcggcg          >  2:364800/1‑149 (MQ=255)
                                                                                                                                     aGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCggtggcggtggc        <  6:5475/149‑1 (MQ=255)
                                                                                                                                       ccAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCCGCCAATCGGTggcggcggcga      >  6:317263/1‑147 (MQ=255)
                                                                                                                                       ccAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTa      >  3:214669/1‑149 (MQ=255)
                                                                                                                                       ccAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTa      >  2:336583/1‑149 (MQ=255)
                                                                                                                                        cAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGgccaacttctggctgaccctgccggcggcggtcatcatcggccgcgagatcgtggtgtctgcgctgcgcgagt                                             >  3:51438‑M2/1‑36 (MQ=255)
                                                                                                                                        cAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGgccaacttctggctgaccctgccggcggcggtcatcatcggccgcgagatcgtggtgtctgcgctgcgcgagt                                             <  4:51438‑M2/109‑74 (MQ=255)
                                                                                                                                         aGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGgccaacttctggctgaccctgccggcggcggtcatcatcggccgcgagatcgtggtgtctgcgctgcgcgagtggatggccgagctaggcgcgcgggcgcatgtggcgggggcc    <  1:137365‑M2/149‑115 (MQ=255)
                                                                                                                                         aGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACgg   <  8:55622/149‑1 (MQ=255)
                                                                                                                                           aaGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACGGc  <  1:336583/149‑1 (MQ=255)
                                                                                                                                           aaGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACGGc  <  5:253033/149‑1 (MQ=255)
                                                                                                                                           aaGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACGGc  <  4:175640/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                             
CATCTGCGCCGCAGTCTTCCACTTACCGAGGTTGGACACCGCCACATGCGCCCGCGCGCCTAGCTCGGCCATCCACTCGCGCAGCGCAGACACCACGATCTCGCGGCCGATGATGACCGCCGCCGGCAGGGTCAGCCAGAAGTTGGCGTGGGTCTGCACCAGCAGCACCAGGGCCACTGCCACCATCAGCTTGTCGGCCACCGGGTCGAGGAAGGCGCCGAACGGCGTGCTCTGCTGCAGTCGACGGGCCAGGTAGCCGTCCAGCCAATCGGTGGCGGCGGCTACGGC  >  NC_002947/4632855‑4633142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.