New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4713629	47 (0.780)	4 (0.070)	4/250	NT	8.6%	coding (1861/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4713674	40 (0.700)					coding (1906/2115 nt)	PP_4171	hypothetical protein

TCGCCAGCAACGCCAACAAGGCCCGTTTCAGCGGCAGCGAGGCGCAAATGGACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4713477‑4713629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcgCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGGCGCTGAGGCGACGGTCGTCGGGGTTGCTGGCCCAGGCATCGACGTAGGCATAGGTCAGGCGCAGGCGGTCGCGCAGGGTGGGGCGCCAGTC  <  NC_002947/4713674‑4713527                                                                                                                                                                                                                                                                                                               TCGCCAGCAACGCCAACAAGGCCCGTTTCAGCGGCAGCGAGGCGCAAATGGACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAA                                                                                                                                                           >  3:60503/1‑148                ACAAGGCCCGTTTCAGCGGCAGCGAGGCGCAAATGGACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGCGCTCGACCAG                                                                                                                                           >  1:287550/1‑149                                                              CACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGG                                                                                             <  2:287550/149‑1                                                                                                      GATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGC                                                                                                >  1:107995/1‑106                                                                                                      GATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGC                                                                                                <  2:107995/106‑1                                                                                                                                                      AGCGCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGGCGCTGAGGCGACGGTCGTCGGGGTTGCTGGCCCAGGCATCGACGTAGGCATAGGTCAGGCGCAGGCGGTCGCGCAGGGTGGGGCGCCA     <  5:40679/149‑1                                                                                                                                                        CGCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGGCGCTGAGGCGACGGTCGTCGGGGTTGCTGGCCCAGGCAACGACGTAGGCATAGGTCAGGCGCAGGCGGTCGCGCAGGGTGGGGCGCCAGT   >  8:298013/1‑149                                                                                                                                                         GCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGGCGCTGAGGCGACGGTCGTCGGGGTTGCTGGCCCAGGCATCGACGTAGGCATAGGTCAGGCGCAGGCGGTCGCGCAGGGTGGGGCGCCAGTC  >  4:335156/1‑149                                                                                                                                                                                                                                                                                                               TCGCCAGCAACGCCAACAAGGCCCGTTTCAGCGGCAGCGAGGCGCAAATGGACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4713477‑4713629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcgCGCTCGACCAGCCGGCACCCCATTCGCGCATCCACCCGGCCGAGCCGCTGTTGCGGGCGCTGAGGCGACGGTCGTCGGGGTTGCTGGCCCAGGCATCGACGTAGGCATAGGTCAGGCGCAGGCGGTCGCGCAGGGTGGGGCGCCAGTC  <  NC_002947/4713674‑4713527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.