New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4713629	47 (0.780)	4 (0.070)	4/250	NT	8.6%	coding (1861/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4713674	40 (0.700)					coding (1906/2115 nt)	PP_4171	hypothetical protein

GACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGACGATGAACC  >  NC_002947/4713527‑4713813                                                                                                                                                    |                                                                                                                                            gACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGc                                                                                                                                            >  4:335156‑M2/1‑148 (MQ=255)  aCTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGTTGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGcg                                                                                                                                           >  8:298013‑M2/1‑147 (MQ=255)    tGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGcgct                                                                                                                                         <  5:40679‑M2/149‑5 (MQ=255)        gcCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTc                                                                                                                                     >  4:319453/1‑149 (MQ=255)        gcCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTc                                                                                                                                     >  8:222124/1‑149 (MQ=255)        gcCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTc                                                                                                                                     <  7:222124/149‑1 (MQ=255)           ccACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTAt                                                                                                                                  >  4:284457/1‑149 (MQ=255)             aCCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTa                                                                                                                                >  1:181830/1‑149 (MQ=255)              cccTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCTACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTAc                                                                                                                               <  1:303612/149‑1 (MQ=255)               ccTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACg                                                                                                                              <  1:59173/149‑1 (MQ=255)               ccTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACg                                                                                                                              >  3:363984/1‑149 (MQ=255)               ccTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACg                                                                                                                              >  2:351663/1‑149 (MQ=255)                   cgcgACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTg                                                                                                                           <  5:367952/148‑1 (MQ=255)                      gACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTAt                                                                                                                                  >  5:67067/1‑138 (MQ=255)                      gACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTAt                                                                                                                                  <  6:67067/138‑1 (MQ=255)                       aCCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGAt                                                                                                                      <  3:284457/149‑1 (MQ=255)                         cgcctgcgcctgACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGc                                                                                                                    >  2:109761/1‑149 (MQ=255)                          gcctgcgcctgACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGcc                                                                                                                   >  5:342954/1‑149 (MQ=255)                           cctgcgcctgACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGccc                                                                                                                  >  7:196236/1‑149 (MQ=255)                                gcctgACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAAc                                                                                                             >  1:195817/1‑149 (MQ=255)                                gcctgACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTAGTACGGTGACGATGCCCTCAAc                                                                                                             >  7:338717/1‑149 (MQ=255)                                       cTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACg                                                                                                                              >  2:124853/1‑125 (MQ=255)                                       cTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACg                                                                                                                              <  1:124853/125‑1 (MQ=255)                                            ccTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTAc                                                                                                 <  4:60503/149‑1 (MQ=255)                                             cTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACTGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACg                                                                                                >  6:50092/1‑149 (MQ=255)                                                 gTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACg                                                                                                >  5:267819/1‑145 (MQ=255)                                                 gTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACg                                                                                                <  6:267819/145‑1 (MQ=255)                                                            ggCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCt                                                                                   <  6:342954/147‑1 (MQ=255)                                                                aGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCGACCAGTACCGCTACGAGCGTCTGGACCTGCGCCt                                                                             <  2:181830/149‑1 (MQ=255)                                                                      cccGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCaa                                                                       <  4:363984/149‑1 (MQ=255)                                                                        cgacgaCCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGc                                                                     >  2:37348/1‑149 (MQ=255)                                                                               cGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCg                                                              >  7:108154/1‑149 (MQ=255)                                                                               cGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGATGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCg                                                              >  1:107542/1‑149 (MQ=255)                                                                                gTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCgg                                                             <  3:319453/149‑1 (MQ=255)                                                                                   gCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGgt                                                           <  1:351663/148‑1 (MQ=255)                                                                                   gCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGgt                                                           <  2:195817/148‑1 (MQ=255)                                                                                     cTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTa                                                        >  4:162168/1‑149 (MQ=255)                                                                                           gcCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGgcag                                                  >  8:230353/1‑149 (MQ=255)                                                                                            cccGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGcgctgttgcgggcgctgaggcgacggtcgtcggggttgctggcccaggcatcgacgtaggcataggtcaggcgcaggcggtcgcgcagggtg                                                 <  2:287550‑M2/149‑93 (MQ=255)                                                                                               gCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGcgctgttgcgggcgctgaggcgacggtcgtcggggttgctggcccaggcatc                                                                                         >  1:107995‑M2/1‑54 (MQ=255)                                                                                               gCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGcgctgttgcgggcgctgaggcgacggtcgtcggggttgctggcccaggcatc                                                                                         <  2:107995‑M2/106‑53 (MQ=255)                                                                                                   cAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTg                                                                            <  5:248367/115‑1 (MQ=255)                                                                                                   cAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTg                                                                            >  6:248367/1‑115 (MQ=255)                                                                                                     gCGGCTCGGCCGGGTGGATGCGCGAATTGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAg                                        >  4:56072/1‑149 (MQ=255)                                                                                                          tCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAGGCGGTTTCGGGTGTATGGCAGCAACCTGGAGCTggc                                   >  4:350900/1‑149 (MQ=255)                                                                                                                     gATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTgg                         <  6:40679/148‑1 (MQ=255)                                                                                                                     gATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGgc                        <  6:360377/149‑1 (MQ=255)                                                                                                                                  ggTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGa           <  3:56072/149‑1 (MQ=255)                                                                                                                                   gTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGAc          <  8:196236/149‑1 (MQ=255)                                                                                                                                         gCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGACGATGaa    >  5:250297/1‑149 (MQ=255)                                                                                                                                          cTGGTCGAGCGcgctgttgcgggcgctgaggcgacggtcgtcggggttgctggcccaggcatcgacgtaggcataggtcaggcgcaggcggtcgcgcagggtggggcgccagtccatttgcgcctcgctgccgctgaaacgggccttgt   >  1:287550‑M2/1‑11 (MQ=255)                                                                                                                                          cTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGACGATGAAc   >  7:285267/1‑149 (MQ=255)                                                                                                                                           tGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGACGATGAAcc  >  4:300262/1‑149 (MQ=255)                                                                                                                                                gAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGgc                        >  3:255264/1‑122 (MQ=255)                                                                                                                                                gAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGgc                        <  4:255264/122‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            GACTGGCGCCCCACCCTGCGCGACCGCCTGCGCCTGACCTATGCCTACGTCGATGCCTGGGCCAGCAACCCCGACGACCGTCGCCTCAGCGCCCGCAACAGCGGCTCGGCCGGGTGGATGCGCGAATGGGGTGCCGGCTGGTCGAGCGCGCTGTTCTATTACGGTGACGATGCCCTCAACCAGTACCGCTACGAGCGTCTGGACCTGCGCCTGGCCAAGCGTTTTCGGGTGTATGGCAGCAACCTGGAGCTGGCGGCGCTGTGGCAGCAGCGCCTGGACGATGAACC  >  NC_002947/4713527‑4713813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.