| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5118906 = | 65 (1.080) | 4 (0.070) | 4/252 | NT | 6.0% | coding (680/1341 nt) | PP_4505 | sensor histidine kinase |
| ? | NC_002947 | 5118969 = | 64 (1.110) | coding (743/1341 nt) | PP_4505 | sensor histidine kinase | |||||
CTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5119058‑5118906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCCCATGCCG > NC_002947/5118969‑5119115 CTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGG > 7:2212/1‑149CTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGG < 7:62392/149‑1 TTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGC > 1:87666/1‑149 TTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGC > 4:128909/1‑149 TTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGC > 6:188698/1‑149 ATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCG > 7:322718/1‑149 CCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAAT > 3:276421/1‑134 CCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAAT < 4:276421/134‑1 GAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGA < 8:322718/149‑1 GCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCCCATG > 3:311686/1‑149 GCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAACACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCCCATGCC > 7:231775/1‑148 CGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGTCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCCCATGCCG > 4:353303/1‑148 CTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCAGTGGCGAGCGCAGTTCGTGGGACACGTCGCGTAGCAGCTGGCGCTGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5119058‑5118906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCCCATGCCG > NC_002947/5118969‑5119115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |