New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5140834	53 (0.880)	5 (0.090)	4/252	NT	8.4%	coding (728/894 nt)	PP_4525	LysR family transcriptional regulator
	?	NC_002947	= 5140853	59 (1.030)					coding (709/894 nt)	PP_4525	LysR family transcriptional regulator

GCATTCCGACGACTGGTTAATCGTTTCGCTTTGTTGCAGGTCGATCCATGCCTGCAGATTAGCCCCGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5140683‑5140834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagTCGATGCTCGACAGCCTGCCTGGGCGTGATCGGGTGAGGGTGCACTCGCTGCAGGCACCTTTCGATCAGGCGGTCACCTGGCTGATGTGGCGCCAAGGTATGCGCGGGGCTAATCTGCAGGCATGGATCGACCTGCAACAAAGC  <  NC_002947/5140853‑5140710                                                                                                                                                                                                                                                                                                          GCATTCCGACGACTGGTTAATCGTTTCGCTTTGTTGCAGGTCGATCCATGCCTGCAGATTAGCCCCGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCC                                                                                                                                                     >  2:123327/1‑149  CATTCCGACGACTGGTTAATCGTTTCGCTTTGTTGCAGGTCGATCCATGCCTGCAGATTAGCCCCGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCC                                                                                                                                                    <  8:288073/149‑1                             CTTTGTTGCAGGTCGATCCATGCCTGCAGATTAGCCCCGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAGTCGATGCTCGACAGCCTGCCTGGGC                                                                                                                         <  6:222057/149‑1                                                     TGCAGATTAGCCCTGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAGTCGATGCTCGACAGCCTGCCTGGGCG                                                                                                                        <  5:4801/126‑1                                                     TGCAGATTAGCCCTGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAGTCGATGCTCGACAGCCTGCCTGGGCG                                                                                                                        >  6:4801/1‑126                                                                                   CACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAGTCGATGCTCGACAGCCTGCCTGGGCG                                                                                                                        <  1:39397/96‑1                                                                                   CACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAGTCGATGCTCGACAGCCTGCCTGGGCG                                                                                                                        >  2:39397/1‑96                                                                                                                                                    CCCAGTCGATGCTCGACAGCCTGCCTGGGCGTGATCGGGTGAGGGTGCACTCGCTGCAGGCACCTTTCGATCAGGCGGTCACCTGGCTGATGTGGCGCCAAGGTATGCGCGGGGCTAATCTGCAGGCATGGATCGACCTGCAACAAAGC  <  8:77848/149‑1                                                                                                                                                                                                                                                                                                          GCATTCCGACGACTGGTTAATCGTTTCGCTTTGTTGCAGGTCGATCCATGCCTGCAGATTAGCCCCGCGCATACCTTGGCGCCACATCAGCCAGGTGACCGCCTGATCGAAAGGTGCCTGCAGCGAGTGCACCCTCACCCGATCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5140683‑5140834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagTCGATGCTCGACAGCCTGCCTGGGCGTGATCGGGTGAGGGTGCACTCGCTGCAGGCACCTTTCGATCAGGCGGTCACCTGGCTGATGTGGCGCCAAGGTATGCGCGGGGCTAATCTGCAGGCATGGATCGACCTGCAACAAAGC  <  NC_002947/5140853‑5140710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.