New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5331917	79 (1.310)	5 (0.090)	5/252	NT	6.0%	coding (147/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA
	?	NC_002947	= 5331935	80 (1.390)					coding (165/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA

TATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5331766‑5331917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGGTGCAACCCCATAAAGATTCTGGTTGGCTTTTT  <  NC_002947/5331935‑5331790                                                                                                                                                                                                                                                                                                            TATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATG                                                                                                                                                       >  5:370757/1‑149   TTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGT                                                                                                                                                     <  6:186635/149‑1   TTCATGTCCACCCTAGAAAAGCAAAAAGACAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACAAAGGGTGAGGAGTACATGGGTGAGCCAATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGT                                                                                                                                                     >  1:334417/1‑149                               CCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTCAACGGTCTTGTTGACGCCGACCATCAG                                                                                                                         <  4:32423/149‑1                                                  GGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTCAACGGTCTTGTCGACGCCGACCATCAGC                                                                                                                        >  7:340475/1‑131                                                  GGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTCAACGGTCTTGTCGACGCCGACCATCAGC                                                                                                                        <  8:340475/131‑1                                                                                      CATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTCAACGGTCTTGTCGACGCCGACCATCA                                                                                                                          <  5:200762/93‑1                                                                                      CATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTCAACGGTCTTGTCGACGCCGACCATCA                                                                                                                          >  6:200762/1‑93                                                                                                                                                   ATGGTCAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGG                                  <  1:30751/120‑1                                                                                                                                                   ATGGTCAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGG                                  >  2:30751/1‑120                                                                                                                                                    TGGTCAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGGTGCAACCCCATAAAGATTCTGGTTGGCTTT    <  1:96093/149‑1                                                                                                                                                    TGGTCAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGGTGCAACCCCATAAAGATTCTGGTTGGCTTT    >  6:16601/1‑149                                                                                                                                                      GTCAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGGTGCAACCCCATAAAGATTCTGGTTGGCTTTTT  >  6:49104/1‑149                                                                                                                                                                                                                                                                                                            TATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACTGGCTGGAAGCAAGAGCTGATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5331766‑5331917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtcAACGGTCTTGTCGACGCCGACCATCAGCTCTTGCTTCCAGCCAGTGAGGATCTTGGTGAAGTGCTTGCGCATGGGCTCACCCATGTACTCCTCACCCTTGGTCTCCTGATAGGGTGCAACCCCATAAAGATTCTGGTTGGCTTTTT  <  NC_002947/5331935‑5331790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.