BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5331917	79 (1.310)	5 (0.090)	5/252	NT	6.0%	coding (147/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA
*	?	NC_002947	= 5331935	80 (1.390)	5 (0.090)	5/252	NT	6.0%	coding (165/447 nt)	dksA	RNA polymerase‑binding transcription factor DksA

Only 100 of 106 total aligned reads displayed.

ATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGATAAAACCC  >  NC_002947/5331771‑5332065

aTGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Cgg                                                                                                                                                    >  6:24192/1‑149 (MQ=255)

aTGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Cgg                                                                                                                                                    >  6:271640/1‑149 (MQ=255)

   tCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑CGCTGGAAGCAAGAGCTGATGGT‑CGGCGt                                                                                                                                                 >  7:67355/1‑149 (MQ=255)

    ccACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTc                                                                                                                                                >  2:304760/1‑149 (MQ=255)

     cACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTc                                                                                                                                                <  2:220066/148‑1 (MQ=255)

      aCCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGa                                                                                                                                              <  6:216079/149‑1 (MQ=255)

      aCCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGa                                                                                                                                              >  5:216079/1‑149 (MQ=255)

      aCCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGa                                                                                                                                              <  5:271640/149‑1 (MQ=255)

        ccTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGAc                                                                                                                                             >  5:16601/1‑148 (MQ=255)

           aGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGa                                                                                                                                         >  1:236946/1‑149 (MQ=255)

              aaaGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCCGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCg                                                                                                                                      <  6:329154/149‑1 (MQ=255)

               aaGCAAAAAGCCAACAAGAATCTTTATGGGGTTGCACCCTATCAGCAGACCAAGGGTGAGGAGTACATGGGTGAGCCAATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑AGGCGTCGACAAGACCGt                                                                                                                                     >  5:220832/1‑149 (MQ=255)

                aGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGtt                                                                                                                                    <  3:77338/149‑1 (MQ=255)

                   aaaaaGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTgac                                                                                                                                 >  6:49104‑M2/1‑146 (MQ=255)

                     aaaGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTgacca                                                                                                                               >  6:16601‑M2/1‑144 (MQ=255)

                     aaaGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTgacca                                                                                                                               <  1:96093‑M2/149‑6 (MQ=255)

                         ccAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGTCCGGCGTCGACAAGACCGTTGACCatat                                                                                                                            <  1:3652/149‑1 (MQ=255)

                         ccAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Caacggtcttgttgacgccgaccatcag                                                                                                                           <  4:32423‑M1/149‑28 (MQ=255)

                            aCCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGa                                                                                                                          >  3:249863/1‑147 (MQ=255)

                             ccAGAATATTTATGGGGTTGCAACCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAATCACTTCACCAAGATCCTCAATCTGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGaaa                                                                                                                        <  1:288275/149‑1 (MQ=255)

                               aGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAaagaa                                                                                                                     <  2:66281/149‑1 (MQ=255)

                               aGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAaag                                                                                                                       >  6:283971/1‑147 (MQ=255)

                                  aTCTTTATTGGGTTGCACCCTATCATGAGACCAATGGTGAGGAGTACATGGGTGATCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTTGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAaagaagaa                                                                                                                  <  2:334417/149‑1 (MQ=255)

                                  aTCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAaagaagaa                                                                                                                  <  8:296605/149‑1 (MQ=255)

                                   tCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGTTCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAaagaagaag                                                                                                                 >  1:239089/1‑149 (MQ=255)

                                       tATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAagcag                                                                                                              <  2:236946/148‑1 (MQ=255)

                                       tATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAagc                                                                                                                <  5:24192/146‑1 (MQ=255)

                                           gggTTGCACCCTATCAGGAGACCAAGGGGGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCaa                                                                                                          <  6:342325/148‑1 (MQ=255)

                                            ggTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Caacggtcttgtcgacgccgaccatcagc                                                                                                                          >  7:340475‑M1/1‑103 (MQ=255)

                                            ggTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Caacggtcttgtcgacgccgaccatcagc                                                                                                                          <  8:340475‑M1/131‑29 (MQ=255)

                                            ggTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACt                                                                                                        >  2:377621/1‑149 (MQ=255)

                                                gCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAATATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTg                                                                                                     <  2:173769/148‑1 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGTTCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGc                                                                                                    <  2:239089/148‑1 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTg                                                                                                     >  6:88539/1‑147 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGc                                                                                                    <  1:34035/148‑1 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGc                                                                                                    <  5:113590/148‑1 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCa                                                                                                   <  4:57803/149‑1 (MQ=255)

                                                 cACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCa                                                                                                   <  3:25350/149‑1 (MQ=255)

                                                  aCCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTg                                                                                                     >  4:57842/1‑146 (MQ=255)

                                                   cccTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTgaccat                                                                                                                              >  2:30751‑M2/1‑114 (MQ=255)

                                                   cccTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTgaccat                                                                                                                              <  1:30751‑M2/120‑7 (MQ=255)

                                                    ccTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTg                                                                                                     >  7:329856/1‑144 (MQ=255)

                                                     cTATCAGGAGACCAAGGGTGAGGAGTACATGGGTTAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCa                                                                                                   <  2:49039/145‑1 (MQ=255)

                                                     cTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCa                                                                                                   >  1:49039/1‑145 (MQ=255)

                                                      tATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATcc                                                                                              >  8:284207/1‑149 (MQ=255)

                                                           ggAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCg                                                                                            >  5:88013/1‑146 (MQ=255)

                                                           ggAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCa                                                                                          >  1:325773/1‑148 (MQ=255)

                                                              gaCCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGAcc                                                                                      <  7:106558/149‑1 (MQ=255)

                                                                 cAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGCCAAGATCATAAACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACcgcg                                                                                   >  1:312358/1‑149 (MQ=255)

                                                                  aaGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACcgcg                                                                                   >  2:191782/1‑148 (MQ=255)

                                                                       tGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATccc                                                                             <  4:249863/149‑1 (MQ=255)

                                                                          ggagTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAg                                                                           <  7:284207/148‑1 (MQ=255)

                                                                                cATGGGTGAGCCCATGCGCAAGCACTTCACCCAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAagag                                                                     >  4:24120/1‑148 (MQ=255)

                                                                                cATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Caacggtcttgtcgacgccgaccatca                                                                                                                            <  5:200762‑M1/93‑27 (MQ=255)

                                                                                cATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑Caacggtcttgtcgacgccgaccatca                                                                                                                            >  6:200762‑M1/1‑67 (MQ=255)

                                                                                 aTGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAgg                                                                    >  3:235869/1‑148 (MQ=255)

                                                                                 aTGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAgg                                                                    >  6:221908/1‑148 (MQ=255)

                                                                                     gTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATACCAGGAAGAGGAATTc                                                               >  7:125258/1‑149 (MQ=255)

                                                                                      tGAGCCCATGCGCAAGCACTTCACCAAGATCCTCGCT‑GGCTGGAAGCGAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAagcagc                                                                                                             >  3:149964/1‑102 (MQ=255)

                                                                                      tGAGCCCATGCGCAAGCACTTCACCAAGATCCTCGCT‑GGCTGGAAGCGAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAagcagc                                                                                                             <  4:149964/102‑1 (MQ=255)

                                                                                      tGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCg                                                              <  5:149350/149‑1 (MQ=255)

                                                                                        aGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGc                                                             <  1:304760/148‑1 (MQ=255)

                                                                                         gCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑TGCTGGAAGCATGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCTCATCCCAGGAAGAGGAATTCGcc                                                            <  6:220832/148‑1 (MQ=255)

                                                                                          cccATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCt                                                          >  1:152478/1‑149 (MQ=255)

                                                                                           ccATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTc                                                         >  8:102134/1‑149 (MQ=255)

                                                                                           ccATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTc                                                         >  1:243559/1‑149 (MQ=255)

                                                                                                cgcAAGCACATCACAAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGAAAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGTAATTCGCCCTCGAACt                                                    <  4:319128/149‑1 (MQ=255)

                                                                                                  cAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTgc                                                  <  4:10924/149‑1 (MQ=255)

                                                                                                   aaGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTgcg                                                 >  2:123820/1‑149 (MQ=255)

                                                                                                   aaGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTgcg                                                 >  2:43340/1‑149 (MQ=255)

                                                                                                           cACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGTCCGTTGACCATATGAAACAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAaccgc                                          <  1:123820/148‑1 (MQ=255)

                                                                                                            aCCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAaccgcga                                        >  1:87033/1‑149 (MQ=255)

                                                                                                              cAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGGACTGCGCAaccgcgacc                                      >  1:282204/1‑149 (MQ=255)

                                                                                                              cAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGGACTGCGCAaccgcgacc                                      >  1:287090/1‑149 (MQ=255)

                                                                                                              cAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAaccgcgacc                                      >  8:120947/1‑149 (MQ=255)

                                                                                                              cAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCAAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAaccgcgacc                                      >  4:150792/1‑149 (MQ=255)

                                                                                                               aaGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCAACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCTCCCTCGAAATGCGCAaccgcgaccg                                     >  3:40440/1‑149 (MQ=255)

                                                                                                                aGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAaccgcgaccgc                                    <  5:283971/149‑1 (MQ=255)

                                                                                                                     cTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAgcg                               <  3:57842/149‑1 (MQ=255)

                                                                                                                      tCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAgcg                               >  6:29927/1‑148 (MQ=255)

                                                                                                                      tCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAgcg                               >  3:354681/1‑148 (MQ=255)

                                                                                                                               tggAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGa                       >  4:99954/1‑148 (MQ=255)

                                                                                                                                         agCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATc            <  3:99954/149‑1 (MQ=255)

                                                                                                                                          gCTGATGGT‑CGGCGTCGACAAGACCGTTgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaacc                             <  8:340475‑M2/131‑104 (MQ=255)

                                                                                                                                          gCTGATGGT‑CGGCGTCGACAAGACCGTTgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaacc                             >  7:340475‑M2/1‑28 (MQ=255)

                                                                                                                                           cTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGCCCGCGAGCGCAAGTTGATCAAGAAAATCGa          >  4:33628/1‑149 (MQ=255)

                                                                                                                                           cTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGa          >  4:83078/1‑149 (MQ=255)

                                                                                                                                           cTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGa          <  2:325773/149‑1 (MQ=255)

                                                                                                                                           cTGATGGT‑CGGCGTCAACAAGACCGTTgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaaccccataaagattctggttgg          <  4:32423‑M2/149‑123 (MQ=255)

                                                                                                                                            tGATGGT‑CGGCGTCGACAAGACCGTTgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatg                                                                 >  6:200762‑M2/1‑26 (MQ=255)

                                                                                                                                            tGATGGT‑CGGCGTCGACAAGACCGTTgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatg                                                                 <  5:200762‑M2/93‑68 (MQ=255)

                                                                                                                                            tGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGAt         <  1:377621/149‑1 (MQ=255)

                                                                                                                                              aTGGT‑Caacggtcttgtcgacgccgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgataggg                                    >  2:30751‑M1/1‑6 (MQ=255)

                                                                                                                                              aTGGT‑Caacggtcttgtcgacgccgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgataggg                                    <  1:30751‑M1/120‑115 (MQ=255)

                                                                                                                                               tGGT‑Caacggtcttgtcgacgccgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaaccccataaagattctggttggcttt      <  1:96093‑M1/149‑145 (MQ=255)

                                                                                                                                               tGGT‑Caacggtcttgtcgacgccgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaaccccataaagattctggttggcttt      >  6:16601‑M1/1‑5 (MQ=255)

                                                                                                                                                 gT‑Caacggtcttgtcgacgccgaccatcagctcttgcttccagccagtgaggatcttggtgaagtgcttgcgcatgggctcacccatgtactcctcacccttggtctcctgatagggtgcaaccccataaagattctggttggcttttt    >  6:49104‑M1/1‑3 (MQ=255)

                                                                                                                                                  t‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGATAAAAcc   >  6:233092/1‑149 (MQ=255)

                                                                                                                                                  t‑CGGCGTCAACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCATGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGATAAAAcc   <  4:40440/149‑1 (MQ=255)

                                                                                                                                                    cGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGATAAAAccc  <  2:96093/149‑1 (MQ=255)

ATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAGGGTGAGGAGTACATGGGTGAGCCCATGCGCAAGCACTTCACCAAGATCCTCACT‑GGCTGGAAGCAAGAGCTGATGGT‑CGGCGTCGACAAGACCGTTGACCATATGAAAGAAGAAGCAGCCAACTTTGCAGATCCCGCAGACCGCGCATCCCAGGAAGAGGAATTCGCCCTCGAACTGCGCAACCGCGACCGCGAGCGCAAGTTGATCAAGAAAATCGATAAAACCC  >  NC_002947/5331771‑5332065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.