New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506677	38 (0.630)	4 (0.070)	4/246	NT	8.2%	intergenic (+136/‑63)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506760	54 (0.960)					coding (21/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease

GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506593‑5506677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctgtcgcTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGG  <  NC_002947/5506760‑5506619                                                                                                                                                                                                                                     GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACAC                                                                                >  2:195769/1‑149  GACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGT                                                                                                                                                   <  7:22569/81‑1  GACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGT                                                                                                                                                   >  8:22569/1‑81            TAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCA                                                                      >  8:288598/1‑148                          CCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCACATCGGGGCGCGAC                                                        <  7:288598/148‑1                                    GGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCT                                             <  1:195769/149‑1                                                                               CTGTCGCTCTGGGGGAGGTGTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGCGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGG  <  6:284368/149‑1                                                                                  TCGCTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGG  <  6:218436/146‑1                                                                                                                                                                                                                                     GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506593‑5506677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctgtcgcTATGGGTGAGGTTTGCGTCATAGGCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGG  <  NC_002947/5506760‑5506619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.