New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506677	38 (0.630)	4 (0.070)	4/246	NT	8.2%	intergenic (+136/‑63)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506760	54 (0.960)					coding (21/1407 nt)	cycA	D‑alanine/beta‑alanine/D‑serine/glycine permease

CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACAT  >  NC_002947/5506619‑5506906                                                                                                                                              |                                                                                                                                                    ccGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCGCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCACACCTCCCCCAGAgcgacag                                                                                                                                              <  6:284368‑M2/149‑8 (MQ=255) ccGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAgcga                                                                                                                                                 <  6:218436‑M2/146‑5 (MQ=255)      aaGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGaa                                                                                                                                         >  2:319363/1‑149 (MQ=255)         agGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCg                                                                                                                                      >  8:148156/1‑149 (MQ=255)            ccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAc                                                                                                                                   <  3:137901/149‑1 (MQ=255)                       gAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTgcaacgcaa                                                                                                                        >  5:63291/1‑149 (MQ=255)                        aaaTGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCAGAGCGACAGATGAACCGCACCTgcaacgcaac                                                                                                                       >  8:245147/1‑149 (MQ=255)                         aaTGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAAcc                                                                                                                      <  7:148156/149‑1 (MQ=255)                                 gCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCa                                                                                                                                    <  8:347928/127‑1 (MQ=255)                                 gCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCa                                                                                                                                    >  7:347928/1‑127 (MQ=255)                                 gCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGAGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAAc                                                                                                              >  5:278818/1‑149 (MQ=255)                                           cAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATcc                                                                                                    <  1:319363/149‑1 (MQ=255)                                            agagTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAgcgacagatcgactctgcattttcggctcagcatttcgcctgtaccggcc                                                                                                   <  1:195769‑M2/149‑51 (MQ=255)                                            agagTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATc                                                                                                     >  1:349406/1‑147 (MQ=255)                                                 cGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGa                                                                                              >  1:228756/1‑149 (MQ=255)                                                   aTCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCACCCTGACCAACCGCCACATCCAGCTGATc                                                                                            >  4:190159/1‑149 (MQ=255)                                                   aTCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTCCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATc                                                                                            >  6:72255/1‑149 (MQ=255)                                                       gTCGCGCCCCGATGTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAgcgacagatcgactctgcattttcggctcagcatttcgcctgtaccggcctcttcgcggg                                                                                         <  7:288598‑M2/148‑61 (MQ=255)                                                        tCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACGTGCAACGCAACCTGACCAACCGCCACATCCAGCTGAt                                                                                             <  8:205273/143‑1 (MQ=255)                                                          gcgcCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACAGCCACATCCAGCTGATCGCCA‑Tcg                                                                                    >  5:339926/1‑149 (MQ=255)                                                             ccccGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑Tcggcg                                                                                 >  5:285488/1‑149 (MQ=255)                                                              cccGATCTGGAACGCGCGTGTTAGCCTACCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑Tcggcgg                                                                                <  5:218436/149‑1 (MQ=255)                                                                 gATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTg                                                                                                                                <  7:140611/99‑1 (MQ=255)                                                                 gATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTg                                                                                                                                >  8:140611/1‑99 (MQ=255)                                                                 gATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAAcc                                                                                                             >  5:113526/1‑118 (MQ=255)                                                                 gATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAAcc                                                                                                             <  6:113526/118‑1 (MQ=255)                                                                     tGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAgcgacagatcgactctgcattttcggctcagcatttcgcctgtaccggcctcttcgcgggtaaacccgctccta                                                                           >  8:288598‑M2/1‑74 (MQ=255)                                                                      ggAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCg                                                                        >  3:17718/1‑149 (MQ=255)                                                                       gAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGa                                                                           <  2:228756/145‑1 (MQ=255)                                                                       gAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGAt                                                                          <  2:259248/146‑1 (MQ=255)                                                                       gAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGAt                                                                          <  7:241359/146‑1 (MQ=255)                                                                       gAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCgg                                                                       >  7:96299/1‑149 (MQ=255)                                                                            cgcgTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCg                                                                  <  6:339926/149‑1 (MQ=255)                                                                               gtgtTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAgcgacagatcgactctgcattttcggctcagcatttcgcctgtaccggcctcttcgcgggtaaacccgctcctacaacgcggtcc                                                                >  2:195769‑M2/1‑64 (MQ=255)                                                                                 gtTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTg                                                             <  8:275003/149‑1 (MQ=255)                                                                                   tagcctagccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGtt                                                           >  1:90647/1‑149 (MQ=255)                                                                                      cctagccGTCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCAt                                                        <  1:64759/149‑1 (MQ=255)                                                                                      cctagccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCCCCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCAt                                                        >  8:107450/1‑149 (MQ=255)                                                                                      cctagccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCTCCACATCCAGCTGATAGCAA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCAt                                                        >  3:298831/1‑149 (MQ=255)                                                                                        tagccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATgg                                                      >  8:61308/1‑149 (MQ=255)                                                                                         agccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATggg                                                     >  6:128464/1‑149 (MQ=255)                                                                                          gccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATgg                                                      <  6:63291/147‑1 (MQ=255)                                                                                          gccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATgg                                                      <  6:278818/147‑1 (MQ=255)                                                                                          gccGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATgg                                                      <  2:90647/147‑1 (MQ=255)                                                                                                   ctcaGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGCTCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAg                                           >  6:29956/1‑149 (MQ=255)                                                                                                       gACAACAAGAATGCAGCCTATGACGCAAACCTCACCAATAGCGACAGATGAACCGCACCTCCAACCCAACCAGACAAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGAcc                                        >  8:85993/1‑148 (MQ=255)                                                                                                        aCAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCACTCGGCGGCGCGATCGGTACCGGTCTGTTCAt                                                        <  1:230788/132‑1 (MQ=255)                                                                                                        aCAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCAt                                                        >  2:230788/1‑131 (MQ=255)                                                                                                         cAAGAAGCCTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATc                                     <  2:248050/149‑1 (MQ=255)                                                                                                          aagaagACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCAt                                      >  2:126517/1‑147 (MQ=255)                                                                                                            gaagaCTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGc                                  >  5:332408/1‑149 (MQ=255)                                                                                                            gaagaCTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGc                                  >  5:279047/1‑149 (MQ=255)                                                                                                               gaCTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTg                               <  5:61250/149‑1 (MQ=255)                                                                                                                    cAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGTCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCgg                          >  2:280440/1‑149 (MQ=255)                                                                                                                     aGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCggg                         <  6:285488/149‑1 (MQ=255)                                                                                                                     aGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCggg                         <  7:245147/149‑1 (MQ=255)                                                                                                                          aTGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGAAAGACCATCAGCCTGGCCGGGCCATc                    >  8:51977/1‑149 (MQ=255)                                                                                                                                       cACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCGGGCCATCGATCATCTTCGTc       <  8:96299/149‑1 (MQ=255)                                                                                                                                        aCCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGt                                                                      <  1:280610/85‑1 (MQ=255)                                                                                                                                        aCCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGt                                                                      >  2:280610/1‑85 (MQ=255)                                                                                                                                         cccATAGCGACAGATGAACCGCACCAGCAACGCAACCTGACAAACCGCCACATCCAGCTGATCGCCA‑TCGGCCGCGCGATCGGTACCGGTCTGTTCATGGGCTCACGCAAGACAATAAGCCTGGACGGCCCATCGATAATCTACGTCTa     >  5:9140/1‑149 (MQ=255)                                                                                                                                          ccATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATc                                                                         <  4:213354/80‑1 (MQ=255)                                                                                                                                          ccATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATc                                                                         >  3:213354/1‑80 (MQ=255)                                                                                                                                            aTAGCGACAGATGAACCGCACCTGCAACGCAACCTCACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACAt  <  5:284368/149‑1 (MQ=255)                                                                                                                                             tAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACAt  >  3:255918/1‑148 (MQ=255)                                                                                                                                              |                                                                                                                                                    CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCACCTGCAACGCAACCTGACCAACCGCCACATCCAGCTGATCGCCA‑TCGGCGGCGCGATCGGTACCGGTCTGTTCATGGGCTCAGGCAAGACCATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACAT  >  NC_002947/5506619‑5506906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.