New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5513242 = | 43 (0.710) | 6 (0.120) | 6/212 | NT | 17.5% | intergenic (+20/‑134) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
? | NC_002947 | 5513350 = | 22 (0.460) | intergenic (+128/‑26) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
TGCCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5513415‑5513242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAC > NC_002947/5513350‑5513497 TGCCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGT > 2:324928/1‑149 GCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCAACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACC > 3:294292/1‑149 CGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAAACCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCG > 1:205370/1‑149 GTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAA < 1:324928/149‑1 GTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGA < 6:22712/148‑1 TACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCG > 7:198619/1‑146 CTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAG < 2:205370/149‑1 CTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAG < 6:99660/149‑1 CTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAG < 6:105008/149‑1 GTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGC < 2:367420/148‑1 GTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGGGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACTGGAACCGCCCCATGGCATTACGCGCACTGTAGGAACGGGGTTACCCGCGAAGAGGC < 7:479/148‑1 TGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTAAGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGG > 7:83439/1‑149 CGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCT < 3:80131/137‑1 CGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCT > 4:80131/1‑137 GGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAGCTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGG > 4:11284/1‑149 AAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGG > 3:24069/1‑148 AACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGG > 5:180101/1‑147 GGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGA < 6:180101/149‑1 TTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTG < 1:367420/148‑1 TACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGC < 8:141526/148‑1 GCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGC > 8:95241/1‑149 AGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGC > 2:213767/1‑147 CACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAC > 3:240888/1‑149 TGCCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5513415‑5513242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAC > NC_002947/5513350‑5513497 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |