| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5513242 = | 43 (0.710) | 6 (0.120) | 6/212 | NT | 17.5% | intergenic (+20/‑134) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | 5513350 = | 22 (0.460) | intergenic (+128/‑26) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGA > NC_002947/5513094‑5513389 | gACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGgcg > 2:67055/1‑149 (MQ=255) gtcttgcccacgccgttgcggcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtg > 3:240888‑M1/149‑149 (MQ=255) gCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGc > 2:122999/1‑149 (MQ=255) ttCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCg > 2:4347/1‑149 (MQ=255) gcccacgccgttgcggcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtgcct > 2:213767‑M1/144‑147 (MQ=255) cgtcgGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGACCCGGATTT‑GAATTTTTGGCGCCTGTGCCg < 1:220163/148‑1 (MQ=255) tcgGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCct < 1:4347/149‑1 (MQ=255) ggCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCctct > 4:249933/1‑149 (MQ=255) ggCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCctct > 3:45166/1‑149 (MQ=255) gccgttgcggcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGc > 8:95241‑M1/138‑149 (MQ=255) aTTGCCGACCATGCGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCgg > 8:328840/1‑149 (MQ=255) gcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTa < 8:141526‑M1/25‑1 (MQ=255) caggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTaa < 1:367420‑M1/26‑1 (MQ=255) tcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTcc < 6:180101‑M1/35‑1 (MQ=255) gTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAg < 4:50599/149‑1 (MQ=255) tgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTggg > 8:117711/1‑149 (MQ=255) cACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGc < 8:217465/148‑1 (MQ=255) cACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCg < 1:67055/149‑1 (MQ=255) gggAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGc < 5:162738/149‑1 (MQ=255) tgCTGGCGGAAGGCTCGCTGGTGGATGGGGATGCAGATGAGCGGGTGGCTAGCCTGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATg < 1:122999/149‑1 (MQ=37) gCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGc > 5:243642/1‑149 (MQ=255) cTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt < 6:333402/143‑1 (MQ=255) cTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt > 5:333402/1‑143 (MQ=255) cTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCg > 3:291610/1‑149 (MQ=255) cTGGCGGAAGGCTCGCGGGAGCAGTTTCAGGCAGATGAGCGGGTGG‑G‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCg < 4:291610/149‑1 (MQ=255) cTGGCGGAAGGCGCGCTGGAGCAGGTGCAGGCAGATGAGCGCGGGG‑G‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCg < 6:243642/149‑1 (MQ=255) aGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCTGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgt < 1:128560/149‑1 (MQ=255) tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTTAAAATTTTTGCCGCATTTGCCGGCATATTCGCGGGTAACCCCGTACGTAAATTGGGCGTAATGCCATGGGGCGGTTCCcggcgt > 1:301938/1‑149 (MQ=255) gCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTa < 5:97028/147‑1 (MQ=255) gCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAgg < 7:12763/149‑1 (MQ=255) aGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg < 3:249933/149‑1 (MQ=255) cAGGTGCTGGCTGATGGGAGGGTGG‑T‑‑CGAGGGGTATGTGGCCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCGGTGGCGGCCTCTTCGATTGTAACCCCGTTCCTAGAGTGGGCGTAATGCCATGGGGCGGTTCGCGTCGTAGGAGCggg < 5:128116/148‑1 (MQ=255) cAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGt < 4:45166/149‑1 (MQ=255) tGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTAc < 7:328840/149‑1 (MQ=255) ccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGtt > 5:180101‑M1/65‑147 (MQ=255) ccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgcGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGttt > 3:24069‑M1/65‑148 (MQ=255) gcagATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCcgcg < 1:197998/149‑1 (MQ=255) ccgtagtactggtgcagggtgtcgatcttgagcatgtgagagctcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTAccc > 4:11284‑M1/62‑149 (MQ=255) agATGAGCGGGTGG‑T‑‑CGTGGTGAATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGaa < 3:117110/149‑1 (MQ=255) aTGAGCGGGTGG‑T‑‑CGAGGTGTATCTTGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACACTGGGCGCAATGCCATGGGGCGGTTCCCGCCGTAGGAGCGGGTTTACCCGCGAaga < 5:131933/149‑1 (MQ=255) aTGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgggg < 1:351378/113‑1 (MQ=255) aTGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgggg > 2:351378/1‑113 (MQ=255) tGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAagag < 2:293173/149‑1 (MQ=255) gAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAgg > 8:198619/1‑149 (MQ=255) gggTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg < 7:117711/149‑1 (MQ=255) gg‑t‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggca > 8:83439/1‑147 (MQ=255) agggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCcgcg < 3:80131‑M1/91‑1 (MQ=255) agggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCcgcg > 4:80131‑M1/47‑137 (MQ=255) ggcGAGGTGTATCTGGGCCGCTGA‑CAGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTCACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCGGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcaca < 6:290089/146‑1 (MQ=255) tGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCt > 7:319336/1‑149 (MQ=255) gcccGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTGCGCGGGTACCCCCGTTCCAACAGTCGGCTTACTGCCAGGGGGCGGTTCCCGGCGTAGGAGCGGGTTTACCCGCCAAGAGGCCGGCACAGGCACAGCATCCCttt < 6:203322/147‑1 (MQ=38) ccGCTGA‑CCGTATTT‑TATTTTTTGGGGCCTGTGCCGGCCTCTTGGCGGTTAACCCGGTTCCTCCTGTGGGCTTAATGCCATGGGGCGGTTCCCGTCGTAGGAGGGGGTTTACCCGCGTAGAGGCCGGCACAGGCACAGCATCCCTTTCa < 8:319336/149‑1 (MQ=255) gATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca < 2:301938/149‑1 (MQ=255) gAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAAATCTCACATg > 8:294323/1‑148 (MQ=255) aaTTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTAAACTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCACAGCATCCCATTCAGGAACTCTcaaaaga > 4:294292/1‑143 (MQ=38) cgcCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGa < 7:294323/149‑1 (MQ=255) | GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGG‑T‑‑CGAGGTGTATCTGGGCCGCTGA‑CCGGATTT‑GAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGA > NC_002947/5513094‑5513389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |