| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6004601 = | 58 (0.960) | 4 (0.070) | 4/248 | NT | 7.1% | coding (530/891 nt) | PP_5259 | LysR family transcriptional regulator |
| ? | NC_002947 | 6004670 = | 50 (0.880) | coding (599/891 nt) | PP_5259 | LysR family transcriptional regulator | |||||
CGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004755‑6004601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAG > NC_002947/6004670‑6004815 CGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGC > 1:110535/1‑149 CCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCACTTCGATACGTT < 7:48826/145‑1 CCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCACTTCGATACGTT > 8:48826/1‑145 GTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGG > 1:299532/1‑116 GTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGG < 2:299532/116‑1 GCGCCCGGAGGCCTGGCATGAGTGGTTCCTTGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGG < 8:51587/149‑1 CGCCCGGAGGCCTGGCATGAGTGGGTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGC < 6:367777/149‑1 GCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGC > 6:137046/1‑148 GCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGC > 8:214274/1‑148 CGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAG < 2:374210/149‑1 CGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004755‑6004601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAG > NC_002947/6004670‑6004815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |