New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 356708	40 (0.660)	3 (0.050)	3/246	NT	5.9%	coding (53/1377 nt)	tdcG‑I	L‑serine dehydratase
	?	NC_002947	= 356769	59 (1.050)					coding (114/1377 nt)	tdcG‑I	L‑serine dehydratase

TGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACAACGCCAC  >  NC_002947/356561‑356855                                                                                                                                                    |                                                                                                                                                    tgCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTcc                                                                                                                                                    <  5:252706/149‑1 (MQ=255) tgCTGGCATTCAAGGCGGCACGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTcc                                                                                                                                                    >  6:251639/1‑149 (MQ=255)              ggcggcCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGcc                                                                                                                                       <  5:272847/149‑1 (MQ=255)                  gcCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCAt                                                                                                                                   <  5:251639/149‑1 (MQ=255)                                ccTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGccc                                                                                                                     >  5:27720/1‑149 (MQ=255)                                      agcTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcg                                                                                                               >  8:76888/1‑149 (MQ=255)                                         tACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcgtt                                                                                                             >  1:25225/1‑148 (MQ=255)                                            cccGCCCTGCGCATGGTGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCaccgcgttcgcgcaggccctgaacgaacagggcgccagcacgca                                                                                                         >  2:6838‑M1/1‑105 (MQ=255)                                                             gcgcAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGt                                                                                        <  1:223790/149‑1 (MQ=255)                                                               gcAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGt                                                                                        >  4:123044/1‑147 (MQ=255)                                                               gcAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGt                                                                                        <  3:123044/147‑1 (MQ=255)                                                                     aCAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCaccgcgttcgcgcaggccctgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctgga                                                                                <  1:6838‑M1/149‑70 (MQ=255)                                                                       aaGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGGCGGGCCCTCCAGCTCaccgcgttcgcgcaggccctgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagg                                                                              <  2:316850‑M1/149‑72 (MQ=255)                                                                       aaGCCAAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGAGTCGGGCCCTCCAGCTCCCACACAGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGACTGCGCGAACGCGGTGAGCTGGAGc                                                                              >  5:108917/1‑149 (MQ=255)                                                                         gCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCATGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCACTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCgt                                                                            >  3:132029/1‑149 (MQ=255)                                                                            cAGCACGAGGTGACTCGACAAGGGCCATCAGCGTGTTCGACCTGTTCAACATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTa                                                                         <  6:27720/149‑1 (MQ=255)                                                                                    ggTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGAt                                                                 <  7:38741/149‑1 (MQ=255)                                                                                     gTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATc                                                                >  6:367450/1‑149 (MQ=255)                                                                                     gTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATc                                                                <  2:25225/149‑1 (MQ=255)                                                                                            gACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTCTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTgc                                                         >  4:184418/1‑149 (MQ=255)                                                                                              cAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTgcgc                                                       <  4:215111/149‑1 (MQ=255)                                                                                              cAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTgcgc                                                       <  5:367450/149‑1 (MQ=255)                                                                                                aTGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCt                                                     >  7:258820/1‑149 (MQ=255)                                                                                                 tGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTgcgc                                                       >  5:274718/1‑146 (MQ=255)                                                                                                 tGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTgcgc                                                       <  6:274718/146‑1 (MQ=255)                                                                                                    ccATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTAt                                                 >  3:68676/1‑149 (MQ=255)                                                                                                    ccATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTAt                                                 >  4:13112/1‑149 (MQ=255)                                                                                                               ttCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGt                                       >  2:343039/1‑148 (MQ=255)                                                                                                                 cGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCa                                     <  1:343039/148‑1 (MQ=255)                                                                                                                  gACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCTTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGa                                                                  <  1:228965/118‑1 (MQ=255)                                                                                                                  gACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGa                                                                  >  2:228965/1‑118 (MQ=255)                                                                                                                  gACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCCTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCCGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGc                                   >  8:8553/1‑149 (MQ=255)                                                                                                                        ttgtaGATCGGTGTCGGGGGCTCCAGCTCCCAGACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCTTTCATGGCCTGCGCGTACTCGGTGAGCTGGAGCGTGTAAAACGGATCTAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCg                              <  4:132029/144‑1 (MQ=255)                                                                                                                        ttCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCgg                             >  5:10158/1‑149 (MQ=255)                                                                                                                          cAAGATCGGTGGCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGt                            <  2:334325/148‑1 (MQ=255)                                                                                                                                 ggTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCa                    <  3:13112/149‑1 (MQ=255)                                                                                                                                  gtgtCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCAt                   >  4:300115/1‑149 (MQ=255)                                                                                                                                  gtgtCGGGCCCTCCAGCTCCCACACCGACGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCAt                   >  1:208335/1‑149 (MQ=255)                                                                                                                                   tgtCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATg                  <  8:51782/149‑1 (MQ=255)                                                                                                                                       gggCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCAc              >  4:150912/1‑149 (MQ=255)                                                                                                                                       gggCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCAc              >  2:251153/1‑149 (MQ=255)                                                                                                                                           ccTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTgagctggagggcccgccaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggctt          <  2:316850‑M2/149‑79 (MQ=255)                                                                                                                                           ccTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGa           >  2:211629/1‑148 (MQ=255)                                                                                                                                             tCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTgagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgt        <  1:6838‑M2/149‑81 (MQ=255)                                                                                                                                             tCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACaa        >  3:332431/1‑149 (MQ=255)                                                                                                                                             tCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACaa        >  7:79627/1‑149 (MQ=255)                                                                                                                                              ccAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGAGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACAAc       >  2:127554/1‑149 (MQ=255)                                                                                                                                                aGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACAACGc     <  3:184418/149‑1 (MQ=255)                                                                                                                                                    cccACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACAACGccac  >  3:357026/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCGGTGAGCTGGAGCGTGTAAAACGGATCGAAGTGCGCCTGTATGGCTCGCTGTCAGCCACCGGTATCGGCCATGGCACCGACAACGCCAC  >  NC_002947/356561‑356855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.