New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3290190 =	47 (0.780)	5 (0.090)	3/254	NT	10.3%	coding (1222/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	3290226 =	42 (0.730)					coding (1258/1752 nt)	PP_2892	hypothetical protein

AGTGGCACAGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTTCTCGGACGCGTAC  >  NC_002947/3290044‑3290337                                                                                                                                                   |                                                                                                                                                    ttcttgaagccattggttgcactgccaccaaactgtacgcgtccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacAt                                                                                                                                                    >  3:284176‑M1/147‑148 (MQ=255) ttcttgaagccattggttgcactgccaccaaactgtacgcgtccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATc                                                                                                                                                   <  7:316184‑M1/3‑1 (MQ=255) ttcttgaagccattggttgcactgccaccaaactgtacgcgtccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATc                                                                                                                                                   <  3:255347‑M1/3‑1 (MQ=255) ttcttgaagccattggttgcactgccaccaaactgtacgcgtccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATc                                                                                                                                                   <  2:55728‑M1/3‑1 (MQ=255)    ggCACAGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGAt                                                                                                                                                >  1:231113/1‑149 (MQ=255)     gCACAGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATc                                                                                                                                               <  8:82745/149‑1 (MQ=255)      cacaGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATcc                                                                                                                                              >  3:365933/1‑149 (MQ=255)        caGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGc                                                                                                                                            <  4:303287/149‑1 (MQ=255)              gCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACg                                                                                                                                      <  5:148930/149‑1 (MQ=255)                   ccAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTAt                                                                                                                                 >  5:275687/1‑149 (MQ=255)                      gTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGc                                                                                                                              <  6:275687/149‑1 (MQ=255)                         gctggcAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCACAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCt                                                                                                                            <  7:211701/148‑1 (MQ=255)                              cAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGtt                                                                                                                      <  4:365933/149‑1 (MQ=255)                               aGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTc                                                                                                                     <  8:13086/149‑1 (MQ=255)                               aGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTc                                                                                                                     <  4:370987/149‑1 (MQ=255)                                   ggTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGAt                                                                                                                                                <  8:69066/118‑1 (MQ=255)                                   ggTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGAt                                                                                                                                                >  7:69066/1‑118 (MQ=255)                                     gggcgtccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGtt                                                                                                               >  4:176493‑M1/111‑149 (MQ=255)                                        tttCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCaa                                                                                                            <  6:296284/149‑1 (MQ=255)                                        tttCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCaa                                                                                                            <  6:304323/149‑1 (MQ=255)                                         ttCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAg                                                                                                           >  6:141153/1‑149 (MQ=255)                                          tccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAgg                                                                                                          >  4:255347‑M1/106‑149 (MQ=255)                                          tccgagaaagcggtggttgtggccgagtgtggtcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAgg                                                                                                          >  8:316184‑M1/106‑149 (MQ=255)                                                      cAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCaaggaagg                                                                                              >  7:262866/1‑149 (MQ=255)                                                        aCGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGc                                                                                            <  8:205602/149‑1 (MQ=255)                                                          gcgAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTg                                                                                          <  4:137796/149‑1 (MQ=255)                                                            gaagaaTATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGgt                                                                                        >  4:353760/1‑149 (MQ=255)                                                            gaagaaTATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGgt                                                                                        >  6:199346/1‑149 (MQ=255)                                                             aagaaTATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGgtg                                                                                       >  1:337172/1‑149 (MQ=255)                                                              agaaTATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGgtgt                                                                                      <  6:140596/149‑1 (MQ=255)                                                               gaaTATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTc                                                                                     <  8:262866/149‑1 (MQ=255)                                                                  tatCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGa                                                                                  >  4:79846/1‑149 (MQ=255)                                                                         tGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAAc                                                                           >  5:127926/1‑149 (MQ=255)                                                                          tcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAgg                                                                                                          >  2:180231‑M1/74‑117 (MQ=255)                                                                          tcaggcctttgagcaatacgttgccgtgcagcaggttggtgtcggacaccagcccttccttggcaccttgaacATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAgg                                                                                                          <  1:180231‑M1/44‑1 (MQ=255)                                                                                 gacTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCa                                                                   >  6:301768/1‑149 (MQ=255)                                                                                               cAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGc                                                     <  5:301768/149‑1 (MQ=255)                                                                                                aaCCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCt                                                    >  1:55728/1‑149 (MQ=255)                                                                                                aaCCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCt                                                    <  6:127926/149‑1 (MQ=255)                                                                                                       tgATGCCGGGCTTCAGCTTTTCCTTCCTGCGCAGTTACAACCGTATCGATCCGCACAACGGCTATCGCCGGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGc                                             <  8:332367/149‑1 (MQ=255)                                                                                                       tgATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGc                                             >  5:220549/1‑149 (MQ=255)                                                                                                         aTGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGc                                             <  3:353760/147‑1 (MQ=255)                                                                                                                   tCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTc                                 >  7:223276/1‑149 (MQ=255)                                                                                                                        ttttCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCca                            >  5:175986/1‑149 (MQ=255)                                                                                                                            ccttcctGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGCCACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGAACCCACTCGGCCCCAac                        >  6:378937/1‑149 (MQ=255)                                                                                                                                cctGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGAc                                        >  6:73410/1‑129 (MQ=255)                                                                                                                                cctGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGAc                                        <  5:73410/129‑1 (MQ=255)                                                                                                                                  tGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCTAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGAc                                        <  5:160777/127‑1 (MQ=255)                                                                                                                                  tGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCTAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGAc                                        >  6:160777/1‑127 (MQ=255)                                                                                                                                     gcAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCt                                                                                           >  1:96337/1‑73 (MQ=255)                                                                                                                                     gcAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCt                                                                                           <  2:96337/73‑1 (MQ=255)                                                                                                                                        gTGACAACCGTATCGATCCGCACAACGTCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCAGACTCGGCCACAACCACTGCTTtctc            <  2:337172/149‑1 (MQ=255)                                                                                                                                        gTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTtctc            <  2:231113/149‑1 (MQ=255)                                                                                                                                        gTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTtctc            <  5:199346/149‑1 (MQ=255)                                                                                                                                         tGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTTCTCg           <  5:141153/149‑1 (MQ=255)                                                                                                                                             aaCCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTGTCTCGGCcg       >  4:281452/1‑149 (MQ=255)                                                                                                                                               ccGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTTCTCGGAcgcg     >  2:232517/1‑149 (MQ=255)                                                                                                                                                  tATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTGGGCCACAACCACCGCTTTCTCGGACGCGTAc  <  1:232517/149‑1 (MQ=255)                                                                                                                                                   ATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGATCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTTCTCGGACGCGTa   <  7:170626‑M1/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGTGGCACAGCAAGCTGCCCAGTGGCTGGCAGCGGGTGATTTCGCTCAAGTACCAACGCGAAGAATATCGCCTGGGTGACGACTCCGGTTTGAGCAACCTGCTGATGCCGGGCGTCAGCTTTTCCTTCCTGCGCAGTGACAACCGTATCGATCCGCACAACGGCTATCGCCTGCAGTTCGATGTTCAAGGTGCCAAGGAAGGGCTGGTGTCCGACACCAACCTGCTGCACGGCAACGTATTGCTCAAAGGCCTGACCACACTCGGCCACAACCACCGCTTTCTCGGACGCGTAC  >  NC_002947/3290044‑3290337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.