New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3596506	34 (0.560)	3 (0.050)	3/254	NT	7.5%	coding (500/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
	?	NC_002947	= 3596535	41 (0.710)					coding (471/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase

ACCGCCTCCAGCACAATGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGC  >  NC_002947/3596359‑3596651                                                                                                                                                    |                                                                                                                                                  aCCGCCTTCAGGATAATGCGAGCACGTTTTTCAACGCTGCCGACTTAGCGGTCTTCGCGCTGGTTGGCACTGGGTGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCAtt                                                                                                                                                  <  7:157007/149‑1 (MQ=255) aCCGCCTCCAGCACAATGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCAtt                                                                                                                                                  >  7:6728/1‑149 (MQ=255)           gCACAATGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGcc                                                                                                                                        >  2:78319/1‑149 (MQ=255)              caATGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTgg                                                                                                                                     <  8:236875/149‑1 (MQ=255)               aaTGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGc                                                                                                                                    >  6:369053/1‑149 (MQ=255)                   cgcgcACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCaaa                                                                                                                                <  3:270048/149‑1 (MQ=255)                   cgcgcACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCa                                                                                                                                  >  2:217634/1‑147 (MQ=255)                    gcgcACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAg                                                                                                                               >  2:71489/1‑149 (MQ=255)                    gcgcACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAg                                                                                                                               <  3:154806/149‑1 (MQ=255)                        aCGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCgg                                                                                                                           <  2:127212/149‑1 (MQ=255)                              ttCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGGACTGGGGGTGAGGAACTGGTGCAGCAGGTAGCCGGGGGCGGCGTGCACCTCGATGAAGTCGCAGCCGGGTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGcgacgc                                                                                                                     >  4:36887/1‑148 (MQ=255)                                 aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGACGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                  >  7:183018‑M2/1‑145 (MQ=255)                                 aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                  <  8:183018‑M2/149‑5 (MQ=255)                                 aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                  <  4:77892‑M2/149‑5 (MQ=255)                                     cTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATcgtcgccgactttggccaggccgcgatcaatgcctgt                                                                                                              <  5:140885‑M1/149‑38 (MQ=255)                                           ccgTATCGGTATTAGCGCTGTTTGTCACTGGCGGTCAGGAACTGGTGCAGCAGGAAACAGTGGGCGGCGTGCAACTAGATGAAGTCGAAGCCGGCTTCACACGCATTGATCGCGTCCTGGCCAAAGTCGCCTACGATGCCAGAGAtctc                                                                                                        >  6:141704/1‑149 (MQ=255)                                                 cGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTc                                                                                                  <  5:324788/149‑1 (MQ=255)                                                 cGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACAGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCtac                                                                                                  >  5:58969/1‑147 (MQ=255)                                                        cgcgCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGa                                                                                             <  4:1268/147‑1 (MQ=255)                                                        cgcgCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGa                                                                                             <  2:133979/147‑1 (MQ=255)                                                                    cACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCg                                                                               <  6:114910/149‑1 (MQ=255)                                                                      cTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGa                                                                             <  4:229536/149‑1 (MQ=255)                                                                           ggTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGttt                                                                        >  4:286206/1‑149 (MQ=255)                                                                           ggTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGttt                                                                        <  5:369053/149‑1 (MQ=255)                                                                              gAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATcgtcgccgactttggccaggccgcgatcaatgcctgtg                                                                                                             >  6:350873‑M1/1‑71 (MQ=255)                                                                              gAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATcgtcgccgactttggccaggccgcgatcaatgcctgtg                                                                                                             <  5:350873‑M1/109‑39 (MQ=255)                                                                                   aCTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGTAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCgt                                                                <  5:318908/149‑1 (MQ=255)                                                                                         gcagcaGGTAACCGTGGGCGGCGTGTAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAgg                                                          >  3:63913/1‑149 (MQ=255)                                                                                              agGTAACCGTGGGCGGCTTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGACAGCGATCTCAGATTCTCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTAAGGTTGcc                                                     <  5:141704/149‑1 (MQ=255)                                                                                                         ggcggcGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCa                                           <  4:85518/148‑1 (MQ=255)                                                                                                          gcggcgTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCAGGGGGGCGGAGGTTTCCACGCCTGTCAGGTTGCCTTgag                                                >  2:298592/1‑140 (MQ=255)                                                                                                            ggcgTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCa                                       <  3:77892/149‑1 (MQ=255)                                                                                                               gTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAggg                                    >  3:269311/1‑149 (MQ=255)                                                                                                                         aTGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGgtgcgtgc                          <  8:342673/149‑1 (MQ=255)                                                                                                                           gAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCAt                        >  4:246610/1‑149 (MQ=255)                                                                                                                               tCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGc                    >  4:9641/1‑149 (MQ=255)                                                                                                                                     ccGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAg              >  8:317967/1‑149 (MQ=255)                                                                                                                                         cTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGAAGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGcc          >  1:72153/1‑149 (MQ=255)                                                                                                                                            cacaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctc                                               <  5:350873‑M2/109‑72 (MQ=255)                                                                                                                                            cacaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctc                                               >  6:350873‑M2/1‑38 (MQ=255)                                                                                                                                             acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctcacccccagtgccaaccagcgcgaagaccgctacggcggcag      <  5:140885‑M2/149‑113 (MQ=255)                                                                                                                                             acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTg            <  5:69415/143‑1 (MQ=255)                                                                                                                                             acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTg            >  6:69415/1‑143 (MQ=255)                                                                                                                                             acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAg      >  3:366621/1‑149 (MQ=255)                                                                                                                                             acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAg      <  1:78319/149‑1 (MQ=255)                                                                                                                                                ggCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAgggg   <  3:286206/149‑1 (MQ=255)                                                                                                                                                 gCATcgtcgccgactttggccaggccgcgatcaatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctcacccccagtgccaaccagcgcgaagaccgctacggcggcagcgtt  <  8:183018‑M1/149‑146 (MQ=255)                                                                                                                                                 gCATcgtcgccgactttggccaggccgcgatcaatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctcacccccagtgccaaccagcgcgaagaccgctacggcggcagcgtt  <  4:77892‑M1/149‑146 (MQ=255)                                                                                                                                                 gCATcgtcgccgactttggccaggccgcgatcaatgcctgtgaagccggcttcgacgtcatcgagttgcacgccgcccacggttacctgctgcaccagttcctcacccccagtgccaaccagcgcgaagaccgctacggcggcagcgtt  >  7:183018‑M1/1‑4 (MQ=255)                                                                                                                                                 gCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGc  >  5:5558/1‑149 (MQ=255)                                                                                                                                                 gCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGAGCCGAAGGGGc  >  1:321061/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACCGCCTCCAGCACAATGCGCGCACGGTTTTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGC  >  NC_002947/3596359‑3596651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.