New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3596506	34 (0.560)	3 (0.050)	3/254	NT	7.5%	coding (500/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase
	?	NC_002947	= 3596535	41 (0.710)					coding (471/1098 nt)	nemA	FMN‑linked N‑ethylmaleimide reductase

TTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAGGGAG  >  NC_002947/3596388‑3596682                                                                                                                                                    |                                                                                                                                                     ttCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGGACTGGGGGTGAGGAACTGGTGCAGCAGGTAGCCGGGGGCGGCGTGCACCTCGATGAAGTCGCAGCCGGGTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGcgacgc                                                                                                                                                     >  4:36887/1‑148 (MQ=255)    aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGACGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                                                  >  7:183018‑M2/1‑145 (MQ=255)    aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                                                  <  8:183018‑M2/149‑5 (MQ=255)    aaCGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgc                                                                                                                                                  <  4:77892‑M2/149‑5 (MQ=255)              ccgTATCGGTATTAGCGCTGTTTGTCACTGGCGGTCAGGAACTGGTGCAGCAGGAAACAGTGGGCGGCGTGCAACTAGATGAAGTCGAAGCCGGCTTCACACGCATTGATCGCGTCCTGGCCAAAGTCGCCTACGATGCCAGAGAtctc                                                                                                                                        >  6:141704/1‑149 (MQ=255)                    cGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTc                                                                                                                                  <  5:324788/149‑1 (MQ=255)                    cGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACAGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCtac                                                                                                                                  >  5:58969/1‑147 (MQ=255)                           cgcgCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGa                                                                                                                             <  2:133979/147‑1 (MQ=255)                           cgcgCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGa                                                                                                                             <  4:1268/147‑1 (MQ=255)                                       cACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCg                                                                                                               <  6:114910/149‑1 (MQ=255)                                         cTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGa                                                                                                             <  4:229536/149‑1 (MQ=255)                                              ggTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGttt                                                                                                        <  5:369053/149‑1 (MQ=255)                                              ggTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGttt                                                                                                        >  4:286206/1‑149 (MQ=255)                                                      aCTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGTAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCgt                                                                                                <  5:318908/149‑1 (MQ=255)                                                            gcagcaGGTAACCGTGGGCGGCGTGTAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAgg                                                                                          >  3:63913/1‑149 (MQ=255)                                                                 agGTAACCGTGGGCGGCTTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGACAGCGATCTCAGATTCTCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTAAGGTTGcc                                                                                     <  5:141704/149‑1 (MQ=255)                                                                            ggcggcGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCa                                                                           <  4:85518/148‑1 (MQ=255)                                                                             gcggcgTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCAGGGGGGCGGAGGTTTCCACGCCTGTCAGGTTGCCTTgag                                                                                >  2:298592/1‑140 (MQ=255)                                                                               ggcgTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑Ca                                                                      <  3:77892/149‑1 (MQ=255)                                                                                  gTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAggg                                                                   >  3:269311/1‑149 (MQ=255)                                                                                            aTGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGgtgcgtgc                                                         <  8:342673/149‑1 (MQ=255)                                                                                              gAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCAt                                                       >  4:246610/1‑149 (MQ=255)                                                                                                  tCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGc                                                   >  4:9641/1‑149 (MQ=255)                                                                                                        ccGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAg                                             >  8:317967/1‑149 (MQ=255)                                                                                                            cTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGAAGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGcc                                         >  1:72153/1‑149 (MQ=255)                                                                                                               cacaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctc                                                                               <  5:350873‑M2/109‑72 (MQ=255)                                                                                                               cacaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctc                                                                               >  6:350873‑M2/1‑38 (MQ=255)                                                                                                                acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGatgcctgtgaagccggcttcgacttcatcgagttgcacgccgcccacggttacctgctgcaccagttcctcacccccagtgccaaccagcgcgaagaccgctacggcggcag                                      <  5:140885‑M2/149‑113 (MQ=255)                                                                                                                acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTg                                           >  6:69415/1‑143 (MQ=255)                                                                                                                acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTg                                           <  5:69415/143‑1 (MQ=255)                                                                                                                acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAg                                     <  1:78319/149‑1 (MQ=255)                                                                                                                acaGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAg                                     >  3:366621/1‑149 (MQ=255)                                                                                                                   ggCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAgggg                                  <  3:286206/149‑1 (MQ=255)                                                                                                                    gCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGc                                 >  5:5558/1‑149 (MQ=255)                                                                                                                    gCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGAGCCGAAGGGGc                                 >  1:321061/1‑149 (MQ=255)                                                                                                                          aTCGCGGCCTGGCCAAAGTCGGGGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑Ca                                                                      >  4:220519/1‑106 (MQ=255)                                                                                                                          aTCGCGGCCTGGCCAAAGTCGGGGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑Ca                                                                      <  3:220519/106‑1 (MQ=255)                                                                                                                              cgGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACGCCAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGc                        <  1:83568/149‑1 (MQ=255)                                                                                                                              cgGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGcc                       <  1:71489/149‑1 (MQ=255)                                                                                                                                gCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCtt                     >  4:327277/1‑149 (MQ=255)                                                                                                                                gCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCtt                     <  1:244227/149‑1 (MQ=255)                                                                                                                                     gCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTgccgc                >  2:370399/1‑149 (MQ=255)                                                                                                                                      ccAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTgccgc                >  2:356611/1‑148 (MQ=255)                                                                                                                                       cAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAggg                                   <  7:181787/128‑1 (MQ=255)                                                                                                                                       cAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAggg                                   >  8:181787/1‑128 (MQ=255)                                                                                                                                           gTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGtt          <  3:327277/149‑1 (MQ=255)                                                                                                                                           gTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGtt          >  8:182611/1‑149 (MQ=255)                                                                                                                                               gCGACGATGCCAGCGATCTTCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAg      >  2:222534/1‑149 (MQ=255)                                                                                                                                                   cgaTGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAGGGAg  <  7:317967/149‑1 (MQ=255)                                                                                                                                                   cgaTGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAGGGAg  <  1:370399/149‑1 (MQ=255)                                                                                                                                                   cgaTGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTACCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAGGGAg  <  8:6728/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TTCAACGCTGCCGCCGTAGCGGTCTTCGCGCTGGTTGGCACTGGGGGTGAGGAACTGGTGCAGCAGGTAACCGTGGGCGGCGTGCAACTCGATGAAGTCGAAGCCGGCTTCACAGGCATTGATCGCGGCCTGGCCAAAGTCGGCGACGATGCCAGCGATCTCCGCTTCGCTGAGCGCCCGGGGGGCGGAGGTTTCCACGCGTGTCAGGTTGCCTTGCGCGTCACG‑CAGGGTGGTGCGTGCATCTGCCGGCAGTGCCGAAGGGGCCACGGGTGCCTTGCCGCCAGGTTGCAGGGAG  >  NC_002947/3596388‑3596682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.