New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4429562 =	46 (0.760)	3 (0.050)	3/248	NT	6.3%	coding (600/711 nt)	PP_3923	phosphoglycerate mutase
	?	NC_002947	4429602 =	46 (0.810)					coding (640/711 nt)	PP_3923	phosphoglycerate mutase

GGGGGCTTGCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGACGTGTAAATC  >  NC_002947/4429416‑4429710                                                                                                                                                   |                                                                                                                                                     atcagctacggaggtcatggcgcattccttatagagtgatttacacgtccccgcagggacacaacaagccgggcttatcggtaggtgacaagctccggcgccctcaacagctgcacatgggcctggctgttgaaggaggccagtgcCAc                                                                                                                                                    <  5:26271‑M1/3‑1 (MQ=255)   gggCTTGCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGt                                                                                                                                                  <  7:247488/149‑1 (MQ=255)      cTTGCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCg                                                                                                                                                >  4:107716/1‑148 (MQ=255)      cTTGCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGc                                                                                                                                               >  5:311132/1‑149 (MQ=255)         gCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTc                                                                                                                                             <  4:297647/148‑1 (MQ=255)         gCAACGCGTGCAGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCCCCTCGGGGGGCACCATTGCCGCCCTGCTCCACCTGGTTACGGGTATTACCCCCCGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTca                                                                                                                                            <  8:286265/149‑1 (MQ=255)              gcgTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTGCCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTcagccag                                                                                                                                       <  5:73077/149‑1 (MQ=255)                           cgcCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTcgcg                                                                                                                          >  3:203781/1‑149 (MQ=255)                           cgcCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTcgcg                                                                                                                          >  5:234544/1‑149 (MQ=255)                                    cggcgATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACg                                                                                                                 >  3:115385/1‑149 (MQ=255)                                        tttacacgtccccgcagggacacaacaagccgggcttatcggtaggtgacaagctccggcgccctcaacagctgcacatgggcctggctgttgaaggaggccagtgcCACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGc                                                                                                             >  2:332956‑M1/108‑149 (MQ=255)                                              gTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGc                                                                                                       >  2:194465/1‑149 (MQ=255)                                               ttGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCTGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGc                                                                                                       <  2:209837/148‑1 (MQ=255)                                                 gCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGcctc                                                                                                    >  8:48831/1‑149 (MQ=255)                                                   ccgcagggacacaacaagccgggcttatcggtaggtgacaagctccggcgccctcaacagctgcacatgggcctggctgttgaaggaggccagtgcCACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTg                                                                                                               <  6:233245‑M1/40‑1 (MQ=255)                                                   ccgcagggacacaacaagccgggcttatcggtaggtgacaagctccggcgccctcaacagctgcacatgggcctggctgttgaaggaggccagtgcCACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTg                                                                                                               >  5:233245‑M1/97‑136 (MQ=255)                                                     tCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCtt                                                                                                 >  2:242974/1‑148 (MQ=255)                                                        tCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCaa                                                                                              >  6:319098/1‑148 (MQ=255)                                                         cACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTc                                                                                                <  6:311132/145‑1 (MQ=255)                                                          aCCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGcctc                                                                                                    <  7:1444/140‑1 (MQ=255)                                                          aCCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGcctc                                                                                                    >  8:1444/1‑140 (MQ=255)                                                          aCCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAg                                                                                           >  8:60571/1‑149 (MQ=255)                                                               gggTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAgg                                                                                      >  2:254116/1‑149 (MQ=255)                                                                    gCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCAt                                                                                 <  1:245349/149‑1 (MQ=255)                                                                        cATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCAtgtg                                                                              >  3:178810/1‑148 (MQ=255)                                                                        cATTGCCGCCCTGCGCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGc                                                                             >  4:209659/1‑149 (MQ=255)                                                                            gccgccCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCt                                                                         >  7:308677/1‑149 (MQ=255)                                                                             ccgccCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTg                                                                        >  1:259107/1‑149 (MQ=255)                                                                                cccTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGtt                                                                      >  4:254831/1‑148 (MQ=255)                                                                                         aCCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCg                                                            >  4:184590/1‑149 (MQ=255)                                                                                                 aCCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAg                                                         <  4:184973/144‑1 (MQ=255)                                                                                                 aCCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAg                                                         >  3:184973/1‑144 (MQ=255)                                                                                                  ccGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTc                                                   <  7:48831/149‑1 (MQ=255)                                                                                                     gTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCAcc                                                >  4:360065/1‑149 (MQ=255)                                                                                                     gTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCAcc                                                >  6:26271/1‑149 (MQ=255)                                                                                                     gTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCAcc                                                <  3:184590/149‑1 (MQ=255)                                                                                                            ccccAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGa                                          >  1:106525/1‑148 (MQ=255)                                                                                                                  ccagGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGa                                          >  7:338629/1‑142 (MQ=255)                                                                                                                  ccagGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGa                                          <  8:338629/142‑1 (MQ=255)                                                                                                                        gTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGTCGTGGCACTGGACTCCTTCAACATCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCttg                             <  4:203781/149‑1 (MQ=255)                                                                                                                           cgcgCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGGGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCttgtt                           <  3:273674/148‑1 (MQ=255)                                                                                                                           cgcgCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCTGGAGCTTGTCACCTACCGATAAGCCCGGCttgtt                           <  1:242974/148‑1 (MQ=255)                                                                                                                            gcgcTGAACTGGCAGATCATCAACAGGGCGCTCCGCCAGCTGAAGGTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTtgttgt                         <  6:234544/149‑1 (MQ=255)                                                                                                                            gcgcTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGt                                                                       <  2:367584/103‑1 (MQ=255)                                                                                                                             cgcTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACTGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTtgtg                        <  3:254831/149‑1 (MQ=255)                                                                                                                              gcTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTgtgt                       >  2:125800/1‑149 (MQ=255)                                                                                                                                  aaCTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTcc                     <  3:209659/147‑1 (MQ=255)                                                                                                                                  aaCTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTcc                     <  2:259107/147‑1 (MQ=255)                                                                                                                                       gCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAg                                                                                       <  6:25710/76‑1 (MQ=255)                                                                                                                                       gCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAg                                                                                       >  5:25710/1‑76 (MQ=255)                                                                                                                                          gATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGAc           <  3:144157/149‑1 (MQ=255)                                                                                                                                               tcaACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGccc                                   >  6:240359/1‑120 (MQ=255)                                                                                                                                               tcaACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGccc                                   <  5:240359/120‑1 (MQ=255)                                                                                                                                               tcaACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGACgt         >  2:188094/1‑146 (MQ=255)                                                                                                                                               tcaACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGACgt         <  1:188094/146‑1 (MQ=255)                                                                                                                                                   CACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGACGTGTAAATc  >  4:178810‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GGGGGCTTGCAACGCGTGCTGGACAGCGCCGGCAGCGGCGATCATGTTGCTATCTTCACCTCGGGTGGCACCATTGCCGCCCTGCTCCACCTGGTTACCGGTATTACCCCCAGCCAGGCGTTCGCGCTGAACTGGCAGATCATCAACACGTCGCTCAGCCAGCTGAAGTTTCGCGGCCGCGACGTGGCACTGGCCTCCTTCAACAGCCAGGCCCATGTGCAGCTGTTGAGGGCGCCGGAGCTTGTCACCTACCGATAAGCCCGGCTTGTTGTGTCCCTGCGGGGACGTGTAAATC  >  NC_002947/4429416‑4429710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.