New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4856096 =59 (0.980)11 (0.200) 9/236 NT 18.5% intergenic (+68/+128) PP_4270/PP_5670 hypothetical protein/hypothetical protein
?NC_002947 4856183 = 44 (0.820)intergenic (+155/+41) PP_4270/PP_5670 hypothetical protein/hypothetical protein

CGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCA  >  NC_002947/4855949‑4856242
                                                                                                                                                   |                                                                                                                                                  
ggacgaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCt                                                                                                                                                   <  2:137465‑M1/2‑1 (MQ=255)
 gacgaagaaaccaggcagttattggagcaggggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgttggaacggaaaggccggggacggtgagtttgtgatagagattgtgaaggtgccgcaccatgCtg                                                                                                                                                  <  4:105640‑M1/3‑1 (MQ=255)
  acgaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCtgt                                                                                                                                                 >  2:313248‑M1/146‑149 (MQ=255)
   cgaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCtgtg                                                                                                                                                >  8:67115‑M1/145‑149 (MQ=255)
   cGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGACCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCtgtg                                                                                                                                                <  7:318311/149‑1 (MQ=255)
    gatgaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgttgcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgcggtgt                                                                                                                                               <  4:346164‑M1/6‑2 (MQ=255)
    gaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTgg                                                                                                                                               <  4:351727‑M1/6‑1 (MQ=255)
    gaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTgg                                                                                                                                               <  6:100410‑M1/6‑1 (MQ=255)
    gaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTgg                                                                                                                                               <  6:268328‑M1/6‑1 (MQ=255)
    cgaagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTgg                                                                                                                                               >  4:170069‑M1/144‑149 (MQ=255)
     aagaaaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTgg                                                                                                                                               <  8:338882‑M1/6‑1 (MQ=255)
      gCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGa                                                                                                                                             <  6:127836/149‑1 (MQ=255)
         aaccaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCg                                                                                                                                          <  2:310969‑M1/11‑1 (MQ=255)
          accaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCgg                                                                                                                                         >  3:347078‑M1/138‑149 (MQ=255)
          accaggcagttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCgg                                                                                                                                         >  2:24833‑M1/138‑149 (MQ=255)
             ggACAGTATGTCTGTGGCCCGGACCGAAATACCCAGCAAAATGACGGCAAACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGca                                                                                                                                      >  2:32269/1‑148 (MQ=255)
               aCAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGACAGCGCAACTAACGGCCGTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTTGGAGCGGGCTTg                                                                                                                                    <  2:236253/149‑1 (MQ=255)
                 agttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacggaaaggccggtgacgttgaggttgtgatagagatagtgaatgtgacgcacaatgCTGTGGTAACGGGCTTGcc                                                                                                                                  <  2:274436‑M1/19‑1 (MQ=255)
                  gttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCggg                                                                                                                                        >  8:37117‑M1/130‑142 (MQ=255)
                  gttattggagcatgggttgcgggccatgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCggg                                                                                                                                        <  7:37117‑M1/13‑1 (MQ=255)
                  gTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGccc                                                                                                                                 <  5:203040/149‑1 (MQ=255)
                     tGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCcgc                                                                                                                               >  1:80995/1‑148 (MQ=255)
                       tCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGaa                                                                                                                            >  2:200293/1‑149 (MQ=255)
                          gtgGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAacac                                                                                                                         >  7:350641/1‑149 (MQ=255)
                             gcccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGACCACggg                                                                                                                      >  7:196908/1‑149 (MQ=255)
                             gcccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACggg                                                                                                                      <  6:350990/149‑1 (MQ=255)
                             gcccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACggg                                                                                                                      <  2:128712/149‑1 (MQ=255)
                             gcccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACgg                                                                                                                       <  2:61603/148‑1 (MQ=255)
                               ccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGc                                                                                                                     >  4:160551/1‑148 (MQ=255)
                               ccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGc                                                                                                                     >  3:288444/1‑148 (MQ=255)
                                  gcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAg                                                                                                                 <  1:200293/149‑1 (MQ=255)
                                       aaaTACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGt                                                                                                            <  8:350641/149‑1 (MQ=255)
                                         aTACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGc                                                                                                          <  6:30482/149‑1 (MQ=255)
                                            tgcagattgcctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCAt                                                                                                       <  8:298222‑M1/46‑1 (MQ=255)
                                            cccAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCCCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCAt                                                                                                       <  7:142384/149‑1 (MQ=255)
                                             gcagattgcctgggggcaggaggatgctgtcagagtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                      <  6:160508‑M1/47‑1 (MQ=255)
                                              cAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                      >  2:308998/1‑148 (MQ=255)
                                              cAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCAGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                      >  5:43838/1‑148 (MQ=255)
                                               aGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGaa                                                                                                                  <  4:178162/135‑1 (MQ=255)
                                               aGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGaa                                                                                                                  >  3:178162/1‑135 (MQ=255)
                                                      ctgggggcaggcggatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGCGCCATCCACCgcgc                                                                                              <  8:162959‑M1/55‑1 (MQ=255)
                                                         cGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCtata                                                                                          >  6:86054/1‑149 (MQ=255)
                                                          ggCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTatat                                                                                         >  1:195279/1‑149 (MQ=255)
                                                               acaGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGCGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTAAAttcttc                                                                                    >  1:310137/1‑149 (MQ=255)
                                                                 agccagcGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTcgc                                                                                  <  3:160551/149‑1 (MQ=255)
                                                                   gatgctgtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCTCgg                                                                                >  5:160508‑M1/81‑149 (MQ=255)
                                                                   ccagcGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTg                                                                                                           <  4:309104/122‑1 (MQ=255)
                                                                   ccagcGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTg                                                                                                           >  3:309104/1‑122 (MQ=255)
                                                                         gtcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagtgattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACAGGGGCGTAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGc                                                                          >  1:274436‑M1/75‑149 (MQ=255)
                                                                          tcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATg                                                                           >  4:152125‑M1/74‑147 (MQ=255)
                                                                          tcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGcc                                                                         >  7:298222‑M1/74‑149 (MQ=255)
                                                                          tcagcgtggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGcc                                                                         >  7:144519‑M1/74‑149 (MQ=255)
                                                                          aaCTAACGGCCATGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGcc                                                                         >  1:154755/1‑149 (MQ=255)
                                                                            cTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCg                                                                       >  3:96551/1‑149 (MQ=255)
                                                                               aCGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGc                                                                      <  5:274500/147‑1 (MQ=255)
                                                                                tggcgtttgaacgtaaaggccggtgacgttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGCGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTcc                                                                   >  7:162959‑M1/68‑149 (MQ=255)
                                                                                 ggCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTccc                                                                  >  1:352721/1‑149 (MQ=255)
                                                                                  gCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCca                                                                 <  2:80995/149‑1 (MQ=255)
                                                                                     cTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCtt                                                                                                                                     >  6:191187/1‑78 (MQ=255)
                                                                                     cTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCtt                                                                                                                                     <  5:191187/78‑1 (MQ=255)
                                                                                     cTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACGCGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAg                                                              >  1:55595/1‑149 (MQ=255)
                                                                                       gCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCa                                                            >  6:46014/1‑149 (MQ=255)
                                                                                        ctaaTTTCGCGAACGCTTGCTCAACTGTCTTGCTCAATTTCTAAAAGCTTGCGCGATCGCTGTGGGAGCGGGCTTGACCGCTAACACGGGCGATGCCAGTGCCATCCACCGCGCTATATTCTTcgcgtg                                                                               <  8:100184/126‑3 (MQ=18)
                                                                                        cTCATTTCGCGACCGCTTGCTCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGACATCAACCGAGCTATATTCTTCGAggg                                                                               >  7:100184/1‑129 (MQ=18)
                                                                                        cTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGGGCCCTCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCCCAGCAt                                                           >  3:105640/1‑149 (MQ=255)
                                                                                                      gCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACTCGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTc                                             <  2:55595/149‑1 (MQ=255)
                                                                                                      gCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACAtt                                              >  7:210156/1‑148 (MQ=255)
                                                                                                            ttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGc                                                                          <  6:43359‑M1/75‑1 (MQ=255)
                                                                                                            ttgagtttgtgatagagattgtgaatgtgccgcacaatgCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGc                                                                          >  5:43359‑M1/40‑114 (MQ=255)
                                                                                                             cAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCTAACACGGGCGAAGCCGGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTATGCGGCACATTCACAAtct                                      <  8:196908/149‑1 (MQ=255)
                                                                                                             cAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAAtct                                      <  8:210156/149‑1 (MQ=255)
                                                                                                              aaCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAAtctc                                     >  2:76398/1‑149 (MQ=255)
                                                                                                                cTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTa                                   >  1:243897/1‑149 (MQ=255)
                                                                                                                 cgtgttGCTCAATTTCTAAAAGCTGGCGCGATCCATGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTAt                                  <  2:368130/145‑1 (MQ=255)
                                                                                                                   tCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCGCATTCACAATCTCTAt                                  <  2:195279/147‑1 (MQ=255)
                                                                                                                   tCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTAt                                  <  2:154755/147‑1 (MQ=255)
                                                                                                                     ttGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGTCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATcac                               >  7:346110/1‑148 (MQ=255)
                                                                                                                        cTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCGACAGCATTGTGCGGCACATTCACAATCTCTATCACAAAc                           >  7:338882/1‑149 (MQ=255)
                                                                                                                        cTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACaaa                            <  7:216209/148‑1 (MQ=255)
                                                                                                                         tCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACgg                                                                                                                       >  7:262474/1‑56 (MQ=33)
                                                                                                                         tCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACgg                                                                                                                       <  8:262474/56‑1 (MQ=33)
                                                                                                                            aTTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGCGCGAACCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCAGCACATTCACAATCTCTATCACAAACTCaa                       >  7:173984/1‑149 (MQ=255)
                                                                                                                             tttCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAAc                      <  4:288444/149‑1 (MQ=255)
                                                                                                                             tttCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAAc                      <  1:244013/149‑1 (MQ=255)
                                                                                                                             tttCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAAc                      <  1:308998/149‑1 (MQ=255)
                                                                                                                               tCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACg                     <  1:76398/148‑1 (MQ=255)
                                                                                                                                     aGCTGGCGCGATCCCTGAGGGAGCGGGATTGCCCGCGAACACGGGCGAAGACCGTGCCATCCACCGCGCAATATTCTTCGCGGGCATGAACGCTCCCACAGAATAGTGCGGCACATTCACAATCTCTATCACAAACTCAAAGTCCCCgg              >  6:296849/1‑149 (MQ=21)
                                                                                                                                              gATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGt     <  5:46014/149‑1 (MQ=255)
                                                                                                                                               aTCCCTGTGGGCGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGtt    >  3:306431/1‑149 (MQ=255)
                                                                                                                                                tCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCca                                                                 <  7:102973/87‑1 (MQ=255)
                                                                                                                                                tCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCca                                                                 >  8:102973/1‑87 (MQ=255)
                                                                                                                                                  ccTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCa  >  4:39024/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CGACGGGCGACCCGGACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCA  >  NC_002947/4855949‑4856242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.