New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	319049 =	62 (1.030)	3 (0.050)	3/248	NT	5.7%	coding (693/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	319095 =	41 (0.720)					coding (647/1815 nt)	PP_0264	sensor histidine kinase

AGTTTCCTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGG  >  NC_002947/318950‑319242                                                                                                                                                   |                                                                                                                                                    aGTTTCCTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCgg                                                                                                                                                  <  8:80394/149‑1 (MQ=255)       cTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCgg                                                                                                                                                  >  4:355476/1‑143 (MQ=255)       cTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCgg                                                                                                                                                  <  3:355476/143‑1 (MQ=255)       cTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCcgc                                                                                                                                             >  2:352295/1‑148 (MQ=255)          gATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGaa                                                                                                                                          <  5:65133/148‑1 (MQ=255)          gATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGaa                                                                                                                                          <  1:352295/148‑1 (MQ=255)               cgcgGGTGTGGGTGATCCATGCCTGGGGGTTGAGAACCATCGGCTGTGTGGCCTGGGTCGGATAGGGCTTGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTATGGCCGCGAAGTCAg                                                                                                                                     <  8:270658/148‑1 (MQ=255)                gcgGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGa                                                                                                                                   <  2:178386/149‑1 (MQ=255)                gcgGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGa                                                                                                                                   <  6:282302/149‑1 (MQ=255)                caccgaaaccctgtggggccgtacgcccgagcagctgttgctgaccgatcacaatggcgtggtcatcctgacttcgcggcccgaCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGt                                                                                                                                                     <  2:370850‑M1/47‑1 (MQ=255)                caccgaaaccctgtggggccgtacgcccgagcagctgttgctgaccgatcacaatggcgtggtcatcctgacttcgcggcccgaCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGt                                                                                                                                                     >  1:370850‑M1/85‑131 (MQ=255)                 cgGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGAt                                                                                                                                  <  1:343146/149‑1 (MQ=255)                 cgGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGAt                                                                                                                                  <  7:228191/149‑1 (MQ=255)                        gggTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACg                                                                                                                           >  5:213104/1‑149 (MQ=255)                             aTCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCAtt                                                                                                                      >  2:299870/1‑149 (MQ=255)                              tCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATtg                                                                                                                     <  6:355486/149‑1 (MQ=255)                               ccAGGGCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACGACGCCATtg                                                                                                                     <  4:56693/148‑1 (MQ=255)                               ccAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGACGCGAAGTCAGGATGCCCACGCCATtgt                                                                                                                    >  5:96982/1‑149 (MQ=255)                                cAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATtgt                                                                                                                    <  1:299870/148‑1 (MQ=255)                                cAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATtgt                                                                                                                    <  1:280854/148‑1 (MQ=255)                                cAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATtgt                                                                                                                    <  3:314843/148‑1 (MQ=255)                                cAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCGGGGTCGGATAGGGCTGTATGGCTATGATGGCCTGGCGCTCGGCGTCGGTCTAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATtg                                                                                                                     <  1:109097/148‑1 (MQ=255)                                        cGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCa                                                                                                           <  5:328213/149‑1 (MQ=255)                                           gTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCa                                                                                                        <  4:145891/149‑1 (MQ=255)                                                gaACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATc                                                                                                                >  3:189082/1‑136 (MQ=255)                                                gaACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATc                                                                                                                <  4:189082/136‑1 (MQ=255)                                                   ccAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAg                                                                                                                                     >  7:221520/1‑112 (MQ=255)                                                   ccAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAg                                                                                                                                     <  8:221520/112‑1 (MQ=255)                                                    cAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAgctgct                                                                                               >  3:43140/1‑149 (MQ=255)                                                       cGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCgg                                                                                            <  6:213104/149‑1 (MQ=255)                                                              ggggCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACg                                                                                     <  4:284354/149‑1 (MQ=255)                                                                     gggTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCca                                                                               >  3:33031/1‑148 (MQ=255)                                                                      ggTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCcaca                                                                             <  1:177935/149‑1 (MQ=255)                                                                      ggTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCca                                                                               >  8:142273/1‑147 (MQ=255)                                                                        tCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAgg                                                                           <  7:183847/149‑1 (MQ=255)                                                                                ggCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGgt                                                                   <  8:195956/149‑1 (MQ=255)                                                                                     gATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGt                                                              >  6:334143/1‑149 (MQ=255)                                                                                     gATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGt                                                              >  1:137274/1‑149 (MQ=255)                                                                                     gATGGAGATCATGTCCTGGCGCTAGTAGTCCGTC‑AGAGTGAGCGTAGCACGGAAGCGCAAGTCGTGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTAGGGAGTACGGCACCACAGGGTTTAGGTGTGGt                                                              >  2:188441/1‑149 (MQ=255)                                                                                           gatgatGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTc                                                             >  3:172913/1‑144 (MQ=255)                                                                                           gatgatGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGAt                                                        <  4:172913/149‑1 (MQ=255)                                                                                                  gCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACttt                                                 <  7:142273/149‑1 (MQ=255)                                                                                                    actggcgcttccgtgctacccgcacgctgaccgacgccgagcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGgtg                                                                  >  1:370850‑M2/48‑131 (MQ=255)                                                                                                    actggcgcttccgtgctacccgcacgctgaccgacgccgagcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGgtg                                                                  <  2:370850‑M2/84‑1 (MQ=255)                                                                                                     ctggcgcttccgtgctacccgcacgctgaccgacgccgagcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTtgc                                               >  1:358015‑M2/47‑148 (MQ=255)                                                                                                                   ggTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcga                                <  4:43140/149‑1 (MQ=255)                                                                                                                        aGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGAt                            >  6:329785/1‑149 (MQ=255)                                                                                                                         gCGTGCGGGTAGGACGGAAGCGCCAGTAGGGCAGAGAAGTCATGATGACCACGCCATTGTGATCGTTCAGCAACAGATGCTCGGGAGTACTGCCACACATGGTTTCGGTGGGGTCGATATCGACTTTGACCACCAGCACTCCGACGATc                           <  1:188441/149‑1 (MQ=255)                                                                                                                                  tAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCgg                  <  1:376184/149‑1 (MQ=255)                                                                                                                                       cGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTcgcg             >  2:342391/1‑149 (MQ=255)                                                                                                                                           agcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACg         >  5:371654‑M2/9‑149 (MQ=255)                                                                                                                                               ccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCcg     >  2:294661‑M2/5‑149 (MQ=255)                                                                                                                                               ccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCcg     >  4:73747‑M2/5‑149 (MQ=255)                                                                                                                                               ccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCcg     >  6:176120‑M2/5‑149 (MQ=255)                                                                                                                                                   tCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCgg  >  7:221155/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGTTTCCTTGATGTCGCGGGTCTGGGTGATCCAGGCCTGCGGGTTGAGAACCAGCGGCTGTGGGGCCTGGGTCGGATAGGGCTGGATGGCGATGATGGCCTGGCGCTCGGCGTCGGTC‑AGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGG  >  NC_002947/318950‑319242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.