New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	402553 =	67 (1.110)	3 (0.050)	3/250	NT	5.9%	coding (645/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA
	?	NC_002947	402652 =	32 (0.560)					coding (546/669 nt)	msrA	peptide methionine sulfoxide reductase MsrA

GGAACAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGGCG  >  NC_002947/402504‑402798                                                                                                                                                     |                                                                                                                                                   ggccgagctgagcaaggccggcttcggtgagatcaccaccgaaatcgacCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTgg                                                                                                                                                    >  8:285867‑M1/50‑149 (MQ=255)   ccgagctgagcaaggccggcttcggtgagatcaccaccgaaatcgacCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                  >  3:109356‑M1/48‑149 (MQ=255)   aaCAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                  >  7:332627/1‑149 (MQ=255)               gTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCggtggt                                                                                                                                      <  8:228653/149‑1 (MQ=255)                  cTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGAt                                                                                                                                   <  2:157917/149‑1 (MQ=255)                     aTGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGAtct                                                                                                                                 >  2:272042/1‑148 (MQ=255)                      tGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                  <  7:127509/130‑1 (MQ=255)                      tGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTc                                                                                                                                                  >  8:127509/1‑130 (MQ=255)                       gCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGGCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCAc                                                                                                                              >  1:122028/1‑149 (MQ=255)                                  cTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGcc                                                                                                                   >  4:193506/1‑149 (MQ=255)                                   ttGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCt                                                                                                                  >  5:105986/1‑149 (MQ=255)                                     tcAGGCTGTGTGGCAGGCACACGCGGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAATTAGACGGTGGGTGCGTGGTCGATTTCggtg                                                                                                                                        <  6:318372/124‑1 (MQ=255)                                     gCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCtt                                                                                                                 <  3:135235/148‑1 (MQ=255)                                     gCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTCCCTGGTGGATTTCggtg                                                                                                                                        >  5:318372/1‑125 (MQ=255)                                              gTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCg                                                                                                       <  3:193506/149‑1 (MQ=255)                                              gTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCg                                                                                                       >  4:70797/1‑149 (MQ=255)                                               gaccaggcaccgaccgtctatttcgccgaggcctaccaccagcagtacctggccaagaacccggacggctactgcggcatcggcggcaccggcgtgtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCgg                                                                                                      >  3:109356‑M2/103‑149 (MQ=255)                                                ggcaggcaCACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGGCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGc                                                                                                     <  4:287004/149‑1 (MQ=255)                                                 ccaggcaccgaccgtctatttcgccgaggcctaccaccagcagtacctggccaagaacccggacggctactgcggcatcggcggcaccggcgtgtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGcc                                                                                                    >  8:285867‑M2/101‑149 (MQ=255)                                                  CAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCt                                                                                                   >  1:25681‑M1/1‑149 (MQ=255)                                                   aggcaCACGCCGGTGCCGCCGCTGCCGCAGTAGCCGGCCGGGGTCGTGGCCAGGTCCTGCGGGTGGAAGGCCTCGGCGAAATAGACGGTCGGTGCCGGGGCGCTTTCGGTGGTGATCGCACCGCCGCCGGCCTTGCTCAGCGCGGCCTg                                                                                                  >  5:302448/1‑149 (MQ=255)                                                   AGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTg                                                                                                  >  1:250179‑M1/1‑149 (MQ=255)                                                      CACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGaa                                                                                               >  8:332627‑M1/1‑149 (MQ=255)                                                       ACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAg                                                                                              >  6:162227‑M1/1‑149 (MQ=255)                                                         acGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGc                                                                                            >  1:379642/1‑149 (MQ=255)                                                         acGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGc                                                                                            >  6:265368/1‑149 (MQ=255)                                                           gCCGGTGCCGCCGATGCCGCAGTAGCCGTGCGGGTTCTTGGCAAGGTACTGCTGGTGGTAGGCCTCAGCGAACTAGACAGTCGGTGCCTGGTCGATTTCGGTGGTGATGTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGaa                                                                                               >  5:263126/1‑144 (MQ=255)                                                           gCCGGTGCCGCCGATGCAGGAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGaa                                                                                               <  6:263126/144‑1 (MQ=255)                                                                    gccgATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtgg                                                                                 >  5:172966/1‑149 (MQ=255)                                                                    gccgATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtgg                                                                                 >  6:197280/1‑149 (MQ=255)                                                                     ccgATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggc                                                                                <  3:257581/149‑1 (MQ=255)                                                                           ccGCAGTAGCCGGCCGGGCTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGAGTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGTTCGGCCTGGAAGGCGTCGCGGCtggccttggc                                                                          <  4:34575/149‑1 (MQ=255)                                                                           ccGCACTAGCCGTCCGGGTTCTGGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGCTCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttggc                                                                          >  4:86305/1‑149 (MQ=255)                                                                           aggcctaccaccagcagtacctggccaagaacccggacggctactgcggcatcggcggcaccggcgtgtgcctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCtggccttggc                                                                          <  4:109356‑M2/75‑1 (MQ=255)                                                                                    ccGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAg                                                                 <  2:361503/149‑1 (MQ=255)                                                                                       tCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTg                                                              >  5:312836/1‑149 (MQ=255)                                                                                                  ggCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGGCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTg                                                    <  1:272042/148‑1 (MQ=255)                                                                                                    ccAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTg                                                 >  4:117535/1‑149 (MQ=255)                                                                                                     cAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGc                                                <  2:379642/149‑1 (MQ=255)                                                                                                        gTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGt                                             <  3:70797/149‑1 (MQ=255)                                                                                                         tACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTa                                            <  6:92505/149‑1 (MQ=255)                                                                                                         tACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTa                                            <  5:265368/149‑1 (MQ=255)                                                                                                           ctgctcGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGCCCTGTACCAGCTGTTACGGGCTGGTGCAg                                              >  3:249412/1‑145 (MQ=255)                                                                                                                             ggCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTgg                         <  5:197280/148‑1 (MQ=255)                                                                                                                                                 cctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTgg    >  2:333898‑M2/5‑149 (MQ=255)                                                                                                                                                 cctgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTg     <  8:270128‑M2/144‑1 (MQ=255)                                                                                                                                                   tgGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGgcg  >  1:255557‑M2/3‑149 (MQ=255)                                                                                                                                                    gGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGgcg  >  1:165619‑M2/2‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGAACAGGGTCATCGTGCTCATGCTTCAGTTACCTTGCAGGCTGGGTGGCAGGCACACGCCGGTGCCGCCGATGCCGCAGTAGCCGTCCGGGTTCTTGGCCAGGTACTGCTGGTGGTAGGCCTCGGCGAAATAGACGGTCGGTGCCTGGTCGATTTCGGTGGTGATCTCACCGAAGCCGGCCTTGCTCAGCTCGGCCTGGAAGGCGTCGCGGCTGGCCTTGGCCTGTTCCAGCTGTTCCGGGCTGGTGCAGTAGATGGCCGAGCGGTACTGGGTGCCGATGTCGTTGCCCTGGCG  >  NC_002947/402504‑402798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.