New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 670392	48 (0.800)	3 (0.050)	3/252	NT	6.0%	coding (1834/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	= 670445	49 (0.850)					coding (1887/2355 nt)	pbpC	peptidoglycan glycosyltransferase

TCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTGGC  >  NC_002947/670300‑670578                                                                                                                                                  |                                                                                                                                       tCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAgcc                                                                                                                                     <  2:347813‑M2/149‑4 (MQ=255) tCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTAGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAgcc                                                                                                                                     <  6:252726‑M2/149‑4 (MQ=255)             cGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTg                                                                                                                         <  4:307909/149‑1 (MQ=255)              ggTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTgg                                                                                                                        <  6:194265/149‑1 (MQ=255)                      cGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTgg                                                                                                                  <  4:19802/147‑1 (MQ=255)                        aaTATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTAGGCCTGGGttt                                                                                                              >  1:374841/1‑149 (MQ=255)                          tatCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTgc                                                                                                            >  5:137114/1‑149 (MQ=255)                              ggCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGa                                                                                                        <  1:325414/149‑1 (MQ=255)                                          aTCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTgg                                                                                                                  >  2:187583/1‑127 (MQ=255)                                          aTCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTgg                                                                                                                  <  1:187583/127‑1 (MQ=255)                                                   ccGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCg                                                                                  >  4:273884/1‑149 (MQ=255)                                                    cGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTAGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCgg                                                                                 <  2:374841/149‑1 (MQ=255)                                                             aGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCgg                                                                        <  4:326402/149‑1 (MQ=255)                                                               ccGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTg                                                                           <  5:210246/144‑1 (MQ=255)                                                               ccGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGt                                                                      <  1:249840/149‑1 (MQ=255)                                                               ccGATGAGAAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTg                                                                           >  6:210246/1‑144 (MQ=255)                                                                       caagcaGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATgg                                                                >  6:3459/1‑147 (MQ=255)                                                                        aagcaGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAg                                                             >  1:8217/1‑149 (MQ=255)                                                                                cacCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGc                                                                              >  2:16521/1‑124 (MQ=255)                                                                                cacCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGc                                                                              <  1:16521/124‑1 (MQ=255)                                                                                 acCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCggg                                                    >  3:334737/1‑149 (MQ=255)                                                                                 acCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCggg                                                    >  2:376035/1‑149 (MQ=255)                                                                                 acCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCggg                                                    >  3:17889/1‑149 (MQ=255)                                                                                   cAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAATCGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGgc                                                   <  1:257015/149‑1 (MQ=255)                                                                                   cAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGgcg                                                  >  3:216745/1‑149 (MQ=255)                                                                                   cAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGgcg                                                  >  2:287669/1‑149 (MQ=255)                                                                                     aCTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAgccgacagttggtgtcctgcttgctcatcggctgacccagcggccaacagatcgctgcaacgccgatattcgcaggtaccggcgcta                                                 <  5:290194‑M2/149‑88 (MQ=255)                                                                                         tCGGCGTCATCGCTTTGCATGGACCCTTGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCaa                                              <  8:315608/147‑1 (MQ=255)                                                                                         tCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAgccgacagttggtgtcctgcttgctcatcggctgacccagcggccaacagatcgctgcaacgccgatattcgcaggtaccggcgctaccgg                                             <  5:369921‑M2/149‑92 (MQ=255)                                                                                            gCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGgcgc                                         <  3:359913/149‑1 (MQ=255)                                                                                              gTCAGCGCTTTGCATGGAGCCTCGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGCTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGt                                       <  6:59976/149‑1 (MQ=255)                                                                                               tCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGt                                       >  7:46894/1‑148 (MQ=255)                                                                                                           aTGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCtgt                          <  1:376035/149‑1 (MQ=255)                                                                                                            tGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCtgtg                         <  3:111287/149‑1 (MQ=255)                                                                                                                 ccTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCgg                    >  1:146215/1‑149 (MQ=255)                                                                                                                     gACGGCACCACGCCGCCAACCTTGCAGGCAgccgacagttggtgtcctgcttgctcatcggctgacccagcggccaacagatcgctgcaacgccgatattcgcaggtaccggcgctaccgggacgctgatgccgcgttggctgtcgc                   >  6:369921‑M2/1‑30 (MQ=255)                                                                                                                           accacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTg            >  1:286665/1‑147 (MQ=255)                                                                                                                           accacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTg            >  1:281790/1‑147 (MQ=255)                                                                                                                           accacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTg            >  4:128747/1‑147 (MQ=255)                                                                                                                           accacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTg            >  2:362955/1‑147 (MQ=255)                                                                                                                            ccacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAg         >  1:102065/1‑149 (MQ=255)                                                                                                                             cacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGc        >  8:67866/1‑149 (MQ=255)                                                                                                                             cacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGc        <  4:17889/149‑1 (MQ=255)                                                                                                                             cacGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGAGCCTGGGTTTCCCCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGc        >  8:229649/1‑149 (MQ=255)                                                                                                                               cgccgcCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCt      >  8:74224/1‑149 (MQ=255)                                                                                                                                gccgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCtt     <  6:137114/149‑1 (MQ=255)                                                                                                                                gccgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCtt     <  4:334737/149‑1 (MQ=255)                                                                                                                                gccgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCtt     <  8:46894/149‑1 (MQ=255)                                                                                                                                gccgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCtt     >  1:124746/1‑149 (MQ=255)                                                                                                                                 ccgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTg    >  6:378667/1‑149 (MQ=255)                                                                                                                                  cgccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTgg   <  5:3459/149‑1 (MQ=255)                                                                                                                                   gccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTGGc  >  2:271794/1‑149 (MQ=255)                                                                                                                                   gccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTGGc  >  2:108712/1‑149 (MQ=255)                                                                                                                                   gccAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTGGc  >  1:256700/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                       TCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAA‑CGAGCGGGGCTTGCGGGTCGATGGCAGCTGCCCGGGCGCCAAGGCGCGTGACATCGCCCTGTGGCCGGCGCCGCTGGAGCCTTGGC  >  NC_002947/670300‑670578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.