New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1731324	34 (0.560)	4 (0.070)	4/250	NT	10.8%	coding (2546/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731346	34 (0.600)					coding (2524/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase

CACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCAC  >  NC_002947/1731199‑1731480                                                                                                                                                     |                                                                                                                                       cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGc                                                                                                                                       <  4:33950‑M2/149‑2 (MQ=255)      ctctGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGCCGACAGGAACGCCATCACCAGcgctgc                                                                                                                                  <  1:284583‑M2/149‑7 (MQ=255)              gCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGTCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAg                                                                                                                          >  6:31777/1‑149 (MQ=255)                      cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCACCgcc                                                                                                                  >  8:118765/1‑147 (MQ=255)                      cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGAc                                                                                                                  >  4:149624/1‑149 (MQ=255)                              tGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAcc                                                                                                            <  7:54872/147‑1 (MQ=255)                                       gCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGAc                                                                                                                  <  8:284920/132‑1 (MQ=255)                                       gCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGAc                                                                                                                  >  7:284920/1‑132 (MQ=255)                                         gTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCa                                                                                               <  7:276478/149‑1 (MQ=255)                                          tGCCCGCGAATGGGCTGCACAGGTCGGCCGCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGcg                                                                                                                                      <  1:220160‑M2/110‑3 (MQ=255)                                          tGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGcg                                                                                                                                      >  2:220160‑M2/1‑107 (MQ=255)                                           gCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCAcc                                                                                             >  2:250241/1‑149 (MQ=255)                                             ccGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAg                                                                                                                          >  3:198117/1‑118 (MQ=255)                                             ccGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAg                                                                                                                          <  4:198117/118‑1 (MQ=255)                                                 gAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTGAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGTGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAg                                                                                       <  4:103565/149‑1 (MQ=255)                                                 gAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAg                                                                                       <  1:250241/149‑1 (MQ=255)                                                  aaTGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAgc                                                                                      <  6:133804/149‑1 (MQ=255)                                                    tGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAgcgc                                                                                    <  3:33950/149‑1 (MQ=255)                                                     gggCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAc                                                                                                             >  6:328312/1‑123 (MQ=255)                                                     gggCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAc                                                                                                             <  5:328312/123‑1 (MQ=255)                                                           cacaGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGt                                                                                >  7:105347/1‑146 (MQ=255)                                                           cacaGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGt                                                                                <  8:105347/146‑1 (MQ=255)                                                                gTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTcc                                                                              <  6:28512/143‑1 (MQ=255)                                                                gTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTcc                                                                              >  5:28512/1‑143 (MQ=255)                                                                    gCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCa                                                                    <  7:183614/149‑1 (MQ=255)                                                                    gCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCa                                                                    <  3:149624/149‑1 (MQ=255)                                                                     cc‑cAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCgtaag                                                                   >  5:240027/1‑145 (MQ=255)                                                                                 tCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCAc                                                          >  3:232154/1‑147 (MQ=255)                                                                                 tCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCAc                                                          >  7:69832/1‑147 (MQ=255)                                                                                     gCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTa                                                    <  7:132139/149‑1 (MQ=255)                                                                                       ctgctgCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGa                                                  <  2:284583/149‑1 (MQ=255)                                                                                                ttGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAAcg                                         >  8:209572/1‑149 (MQ=255)                                                                                                               tGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCCCCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCAcagca                          >  3:327408/1‑149 (MQ=255)                                                                                                                        gggCAGCGACGACAGGAACGCCATCACCAGcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaa                                                                                        <  6:241984‑M2/78‑49 (MQ=255)                                                                                                                        gggCAGCGACGACAGGAACGCCATCACCAGcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaa                                                                                        >  5:241984‑M2/1‑30 (MQ=255)                                                                                                                        gggCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCatga                 >  5:178728/1‑149 (MQ=255)                                                                                                                         ggCAGCGACGACAGGAACGCCATCACCAGCGCTGACACATAACGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGCTAGATACCCAACGCCGCGCCCCACAGCAGCACCatga                 >  8:303939/1‑148 (MQ=255)                                                                                                                          gCAGCGACGACAGGAACGCCATCACCAGcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgc                                                                                   >  4:213196‑M2/1‑28 (MQ=255)                                                                                                                          gCAGCGACGACAGGAACGCCATCACCAGcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgc                                                                                   <  3:213196‑M2/81‑54 (MQ=255)                                                                                                                             gCGACGACAGGAACGCCATCACCAGCTCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCATAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAAc            <  5:31777/149‑1 (MQ=255)                                                                                                                              cgacctcAGGAACTCCATCACCAGCGCTGCCACATAATGCAACGACTGCACCAGCAACCTCGCCACCCAGAAGCGGATGTCCGAACTCGCCAGCCACTGCACCATCTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAAc            <  6:240027/142‑1 (MQ=255)                                                                                                                                       gAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCAc  >  4:28799/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                       CACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCC‑CAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCAC  >  NC_002947/1731199‑1731480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.