New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2385585 =	62 (1.030)	4 (0.070)	4/256	NT	6.8%	coding (293/576 nt)	PP_2093	two‑component system response regulator NasT
	?	NC_002947	2385633 =	50 (0.860)					coding (245/576 nt)	PP_2093	two‑component system response regulator NasT

GCTGTGCCTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTC  >  NC_002947/2385490‑2385781                                                                                                                                                |                                                                                                                                                      ctgatcgataccgactcgccagaccgcgatgtgatggaacaggtagtgctggtcagccgtgaccagccgcggcccatcgtgttgttcaccgacgaGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCtcgtcg                                                                                                                                                  >  2:224060‑M1/96‑149 (MQ=255)     tgCCTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTg                                                                                                                                               <  2:285708/148‑1 (MQ=255)     tgCCTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTg                                                                                                                                               >  4:188049/1‑148 (MQ=255)       ccTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGaa                                                                                                                                             <  5:162016/148‑1 (MQ=255)       ccTTCAGTGCCTGGTCGCTTTCGAAGCGAGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGaa                                                                                                                                             <  7:64410/148‑1 (MQ=255)        cTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGaac                                                                                                                                            >  3:123727/1‑148 (MQ=255)                ccTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATg                                                                                                                                   <  3:170583/149‑1 (MQ=255)                  tGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGt                                                                                                                                                >  1:225329/1‑134 (MQ=255)                  tGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGt                                                                                                                                                <  2:225329/134‑1 (MQ=255)                     tCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCcg                                                                                                                              <  7:217913/149‑1 (MQ=255)                         tttCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGc                                                                                                                          >  4:318451/1‑149 (MQ=255)                             gAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGt                                                                                                                      >  3:349516/1‑149 (MQ=255)                               aGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCa                                                                                                                    >  2:45609/1‑149 (MQ=255)                                   ggCCATGGCCACGTCCAGGATCGGCTGCATCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGc                                                                                                                <  2:320924/149‑1 (MQ=255)                                    gCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCt                                                                                                               >  8:290318/1‑149 (MQ=255)                                      cATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGa                                                                                                             <  8:242979/149‑1 (MQ=255)                                       aTGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGAc                                                                                                            <  2:344998/149‑1 (MQ=255)                                            cACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCAGCCGTGACCAGcc                                                                                                       <  5:162506/149‑2 (MQ=255)                                            cACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCa                                                                                                       <  1:45609/149‑1 (MQ=255)                                             aCGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCAGCCGTGACCAGccg                                                                                                      <  3:188049/149‑3 (MQ=255)                                             aCGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑c                                                                                                     >  2:355592/1‑149 (MQ=255)                                               gTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTa                                                                                                   <  5:336873/149‑1 (MQ=255)                                                tCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTAc                                                                                                  <  3:318451/149‑1 (MQ=255)                                                tCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTAc                                                                                                  <  2:360290/149‑1 (MQ=255)                                                  cAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCt                                                                                                <  6:318722/149‑1 (MQ=255)                                                    ggATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGt                                                                                              >  1:26104/1‑149 (MQ=255)                                                     gATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGtt                                                                                             <  7:14761/149‑1 (MQ=255)                                                       tCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGAGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTc                                                                                            >  8:128012/1‑148 (MQ=255)                                                                 ccGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATcgc                                                                                 <  2:191068/149‑1 (MQ=255)                                                                   gcgcAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGTGGTCGTGCTCGTCGGTGAACAACACGATTGGCCGAGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATcgcg                                                                                <  1:79077/148‑1 (MQ=255)                                                                   gcgcAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCgg                                                                               >  5:60601/1‑149 (MQ=255)                                                                   gcgcAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCgg                                                                               >  5:199086/1‑149 (MQ=255)                                                                        gcaTGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTgg                                                                          <  7:290318/149‑1 (MQ=255)                                                                        gcaTGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTATTCCATCACATCGCGGTCTgg                                                                          <  4:349516/149‑1 (MQ=255)                                                                         caTGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGc                                                                         <  2:78461/149‑1 (MQ=255)                                                                           tGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGa                                                                       <  2:46261/149‑1 (MQ=255)                                                                              aTACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATACCGGGGTCGAGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTAACGGCTGACCAGCA‑CGACCGTTTCCATCACATCGCGGTAAGGCGAGTc                                                                    >  2:158940/1‑149 (MQ=255)                                                                                  cTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTa                                                                >  3:230076/1‑149 (MQ=255)                                                                                          cgacgagcacgaccccgggatgatgcgccaggcgatccaggcaggggtcagtgcTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAg                                                        >  2:224060‑M2/55‑149 (MQ=255)                                                                                                gcacgaccccgggatgatgcgccaggcgatccaggcaggggtcagtgcTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCACCTACCTGTTCCATCACATCGCGGTCTGGCGAGTCg                                                                   <  1:247237‑M2/85‑1 (MQ=255)                                                                                                gcacgaccccgggatgatgcgccaggcgatccaggcaggggtcagtgcTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCg                                                                   >  2:247237‑M2/49‑132 (MQ=255)                                                                                                  ACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGTTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGt                                                <  6:249770‑M1/149‑1 (MQ=255)                                                                                                        cccTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGgc                                          >  6:76989/1‑149 (MQ=255)                                                                                                                     gCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGAc                             <  6:60601/149‑1 (MQ=255)                                                                                                                     gCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTCGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGAc                             >  6:310917/1‑149 (MQ=255)                                                                                                                       cTGGCGCATCATCACGTGGTCTTGCTCGTCTGAGAACAACACGATGGGCCGCGGCTGGTGACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGc                           <  4:37631/149‑1 (MQ=255)                                                                                                                          gcgcATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAgg                        >  3:277589/1‑149 (MQ=255)                                                                                                                           cgcATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGc                       <  1:355592/149‑1 (MQ=255)                                                                                                                              atcatcCCGGGGTCGTGCTCGGCGGTGTACTACCCGATGGGCCGCGGCTGGTCTCGGGTGACCAGCA‑CTACCTTTTCCATCACATCGCGGTCTGGCGTGTCGGTATCGATCAGGACCACGTCCGGGCGCACCGTTTCGACGCAGGCggg                    <  5:310917/149‑1 (MQ=255)                                                                                                                                aggcaggggtcagtgcTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCa                  <  1:224060‑M2/133‑1 (MQ=255)                                                                                                                                 atcCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAg                 <  2:26104/149‑1 (MQ=255)                                                                                                                                  tcCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAgg                >  3:35122/1‑149 (MQ=255)                                                                                                                                  tcCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAgg                >  4:45346/1‑149 (MQ=255)                                                                                                                                    ccGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATGGCTGTGTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGAGGCAGGCGGGCAGGt               <  1:158940/148‑1 (MQ=255)                                                                                                                                    ccGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGt               <  7:128012/148‑1 (MQ=255)                                                                                                                                    ccGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGt               <  4:123727/148‑1 (MQ=255)                                                                                                                                                tcgtcgGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTc  >  5:104669/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                      GCTGTGCCTTCAGTGCCTGGTCGCTTTCGAAGCGGGCCATGGCCACGTCCAGGATCGGCTGCAGCCGCGCAGCATGGATACCTTCGACGATATAGGCACTGACCCCTGCCTGGATCGCCTGGCGCATCATCCCGGGGTCGTGCTCGTCGGTGAACAACACGATGGGCCGCGGCTGGTCACGGCTGACCAGCA‑CTACCTGTTCCATCACATCGCGGTCTGGCGAGTCGGTATCGATCAGCACCACGTCCGGGCGCACCGTTTCGACGCAGGCGGGCAGGTCGATGGTCAGGTC  >  NC_002947/2385490‑2385781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.