New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3265802	46 (0.760)	4 (0.070)	4/244	NT	8.4%	coding (97/378 nt)	PP_2863	membrane protein
	?	NC_002947	= 3265877	45 (0.810)					coding (172/378 nt)	PP_2863	membrane protein

TTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCT  >  NC_002947/3265736‑3266019                                                                                                                                              |                                                                                                                                               ttGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAaccaggc                                                                                                                                         <  3:320760‑M2/149‑8 (MQ=255)    ggCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAaccaggcct                                                                                                                                       >  5:200394‑M2/1‑139 (MQ=255)          cTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTa                                                                                                                                 <  2:121641/148‑1 (MQ=255)               ccTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACAccc                                                                                                                            <  2:326503/148‑1 (MQ=255)                  gTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCgag                                                                                                                         >  7:34330/1‑148 (MQ=255)                      cccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTACCCAGGCCTGGCGTACACCCGAGAAAGt                                                                                                                    >  5:270853/1‑149 (MQ=255)                       ccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGtg                                                                                                                   >  5:361294/1‑149 (MQ=255)                       ccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGtg                                                                                                                   <  4:310176/149‑1 (MQ=255)                       ccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGtg                                                                                                                   <  4:231067/149‑1 (MQ=255)                        cggcaggggggCGTCGCGCATGGACTGGAACGATCAGGCCTGGGGGCCATTGGCGTTGTACCCTGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGtgc                                                                                                                  <  4:63960/143‑1 (MQ=255)                          gCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAAGCAGGCCTGGCGTACACCCGAGAAAGtgctg                                                                                                                <  6:71312/149‑1 (MQ=255)                            cTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCa                                                                                                              <  4:321616/149‑1 (MQ=255)                               ggggCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGc                                                                                                           >  8:291057/1‑149 (MQ=255)                               ggggCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCAGTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGc                                                                                                           <  6:361294/149‑1 (MQ=255)                                 ggcggcGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCgag                                                                                                                         <  4:130056/133‑1 (MQ=255)                                 ggcggcGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCgag                                                                                                                         >  3:130056/1‑133 (MQ=255)                                    ggcgCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTg                                                                                                      <  2:32466/149‑1 (MQ=255)                                           aTGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAgctgct                                                                                               <  6:270853/149‑1 (MQ=255)                                                   gAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGtt                                                                                       >  2:67324/1‑149 (MQ=255)                                                       gATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAaccaggcctgatcgttccaggccatgcgcgccgcccccaggccgggcaacaggcaaagcac                                                                                   <  5:323948‑M2/149‑62 (MQ=255)                                                         tCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCACGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCgg                                                                                 >  3:224371/1‑149 (MQ=255)                                                              ccTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGgcg                                                                            >  3:165640/1‑149 (MQ=255)                                                                  gtggCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGt                                                                        <  2:61099/149‑1 (MQ=255)                                                                    ggCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAaccaggcctgatcgttccaggccatgcgcgccgcccccaggccgggcaacaggcaaagcacgcccaacagcag                                                                       <  1:348140‑M2/148‑74 (MQ=255)                                                                     gCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTg                                                                      <  5:8900/148‑1 (MQ=255)                                                                           ggCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCgcag                                                                >  4:96267/1‑148 (MQ=255)                                                                            gCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCgcag                                                                >  3:184233/1‑147 (MQ=255)                                                                                      cGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCgg                                                    <  6:221261/149‑1 (MQ=255)                                                                                         ccATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGcac                                                 <  7:291057/149‑1 (MQ=255)                                                                                             gAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGc                                                   <  8:29407/143‑1 (MQ=255)                                                                                             gAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGc                                                   >  7:29407/1‑143 (MQ=255)                                                                                                ccTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTc                                                      <  5:105598/137‑1 (MQ=255)                                                                                                ccTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTc                                                      >  6:105598/1‑137 (MQ=255)                                                                                                    aTCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGc                                        <  8:34330/147‑1 (MQ=255)                                                                                                      cAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAgg                                    >  7:250674/1‑149 (MQ=255)                                                                                                       aGCCTGTTGCTGTATTGGCACGACAAACGGCAGGCACGTAACCAGGCCACCCGTACACCCGAGAAACTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTAGGCGCAGCACCTGTTTCGGCACAAGACCCGCAAgct                                   >  8:191208/1‑147 (MQ=255)                                                                                                         ccTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAaccaggcctgatcgttccaggccatgcgcgccgcccccaggccgggcaacaggcaaagcacgcccaacagcagcagcttcaggcgcacgttgcgcacgccttcagcccgtt                                 >  2:348140‑M2/1‑38 (MQ=255)                                                                                                           tGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGGATTCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCg                               >  5:259547/1‑149 (MQ=255)                                                                                                             ttGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGtt                             <  4:165640/149‑1 (MQ=255)                                                                                                              tGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTc                            >  8:144078/1‑149 (MQ=255)                                                                                                                cTGTATTGGCAGGACATGCGGCAGGCACGTAAGCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTCTCGGCACAAGACCCGCAAGGTTTCGTTCCa                          <  4:358074/149‑1 (MQ=255)                                                                                                                cTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTcc                           <  4:320760/148‑1 (MQ=255)                                                                                                                cTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTcc                           <  7:144078/148‑1 (MQ=255)                                                                                                                   tATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAggt                       >  8:166868/1‑149 (MQ=255)                                                                                                                     ttGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAggtgg                     >  1:218828/1‑149 (MQ=255)                                                                                                                       ggCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAggtggt                    <  2:372825/148‑1 (MQ=255)                                                                                                                        gCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGgtgt                  >  1:299275/1‑149 (MQ=255)                                                                                                                         cAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGtgtg                 <  1:67324/149‑1 (MQ=255)                                                                                                                               aaGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTgggg           >  8:224262/1‑149 (MQ=255)                                                                                                                                    gcaggcaCGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATtg      >  6:8435/1‑149 (MQ=255)                                                                                                                                       ggcaCGTAaccaggcctgatcgttccaggccatgcgcgccgcccccaggccgggcaacaggcaaagcacgcccaacagcagcagcttcaggcgcacgttgcgcacgccttcagcccgttgcccacgcagcgcctcagccatgtgccgtg   >  6:323948‑M2/1‑8 (MQ=255)                                                                                                                                        gcaCGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGtgct  >  5:251863/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                               TTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAAGTGCTGCATGCCAGTGAGCTGCTCGGTGGTTGGCCGGGGGCGCTGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCT  >  NC_002947/3265736‑3266019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.