New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3555711 =	46 (0.760)	3 (0.050)	3/252	NT	6.5%	coding (128/1188 nt)	PP_3140	group 2 family glycosyl transferase
	?	NC_002947	3555757 =	43 (0.750)					coding (174/1188 nt)	PP_3140	group 2 family glycosyl transferase

TGGGCCTGTTGGCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATACGCGCTT  >  NC_002947/3555609‑3555903                                                                                                                                                       |                                                                                                                                                   gccaaccgggccgtgtcatccgaacagttgtctgccacgaccagcaagcggtcgccgtccagcagttgcggcgtaacgctggccagcatcgcacgaatgaccAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTg                                                                                                                                                    >  3:11925‑M1/103‑149 (MQ=255)   ggCCTGTTGGCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTACAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTg                                                                                                                                                    <  7:329630/147‑1 (MQ=255)    gCCTGTTGGCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGt                                                                                                                                                  >  3:305161/1‑148 (MQ=255)      cTGTTGGCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCAt                                                                                                                                               <  1:146928/149‑1 (MQ=255)            gCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTg                                                                                                                                          <  5:358727/148‑1 (MQ=255)            gCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTg                                                                                                                                          <  4:305161/148‑1 (MQ=255)            cgtgtcatccgaacagttgtctgccacgaccagcaagcggtcgccgtccagcagttgcggcgtaacgctggccagcatcgcacgaatgaccAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGc                                                                                                                                         >  5:237967‑M1/92‑149 (MQ=255)             cGATCATCGTCCTGGTACCGGGGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCg                                                                                                                                        <  4:54434/149‑1 (MQ=255)                 catcGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGc                                                                                                                                    >  2:108724/1‑149 (MQ=255)                  atcGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCTCCAGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCt                                                                                                                                   >  7:72126/1‑149 (MQ=255)                               cGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTAcg                                                                                                                      >  6:167321/1‑149 (MQ=255)                                  tgtCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTAcgccg                                                                                                                   >  5:239194/1‑149 (MQ=255)                                      ggTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAAc                                                                                                               >  3:84235/1‑149 (MQ=255)                                             ttGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgctg                                                                                                          <  8:295237/147‑1 (MQ=255)                                             ttGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgctg                                                                                                          <  5:237200/147‑1 (MQ=255)                                                   cAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGa                                                                                                  >  1:81707/1‑149 (MQ=255)                                                      gtgtTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGATCCGAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGAc                                                                                                 <  1:108724/149‑1 (MQ=255)                                                         ttGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCa                                                                                                                              <  4:196458/115‑1 (MQ=255)                                                         ttGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCa                                                                                                                              >  3:196458/1‑115 (MQ=255)                                                            cTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGc                                                                                          <  4:80176/148‑1 (MQ=255)                                                               gCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgc                                                                                                            >  6:33263/1‑127 (MQ=255)                                                               gCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgc                                                                                                            <  5:33263/127‑1 (MQ=255)                                                                cTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGAGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTc                                                                                     >  1:284093/1‑149 (MQ=255)                                                                 ttGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCg                                                                                    >  2:264271/1‑149 (MQ=255)                                                                    cctgccGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTgg                                                                                 <  1:264271/149‑1 (MQ=255)                                                                    cctgccGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTgg                                                                                 >  8:141898/1‑149 (MQ=255)                                                                     ctgccGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgctg                                                                                                          >  7:292534/1‑123 (MQ=255)                                                                     ctgccGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAActgctg                                                                                                          <  8:292534/123‑1 (MQ=255)                                                                        ccGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGa                                                                             <  2:81707/149‑1 (MQ=255)                                                                               ggTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGt                                                                      >  3:370535/1‑149 (MQ=255)                                                                                  ccAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCg                                                                   >  5:178414/1‑149 (MQ=255)                                                                                   cAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCgg                                                                  <  5:167321/149‑1 (MQ=255)                                                                                          aaGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGTGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGacac                                                           >  2:253014/1‑149 (MQ=255)                                                                                          aaGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGacac                                                           >  5:371252/1‑149 (MQ=255)                                                                                             gcacgaatgaccagcgcctcatcgtgggcgggcaccaacaccgccactcgcgggcgctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACg                                                          >  5:237967‑M2/59‑149 (MQ=255)                                                                                                aTTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCg                                                     >  8:135344/1‑149 (MQ=255)                                                                                                    gCGAGCGCCCGCGAGTGGCGGTGTTTGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGtt                                                  <  8:72126/148‑1 (MQ=255)                                                                                                    gCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGtt                                                  <  4:84235/148‑1 (MQ=255)                                                                                                    gCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTg                                                 >  1:58269/1‑149 (MQ=255)                                                                                                      gAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTgg                                                >  6:361065/1‑148 (MQ=255)                                                                                                        cagcgcctcatcgtgggcgggcaccaacaccgccactcgcgggcgctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGc                                               >  3:11925‑M2/48‑149 (MQ=255)                                                                                                        GCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCAc                                             >  7:135344‑M1/1‑149 (MQ=255)                                                                                                               cgAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTc                                      <  6:178414/149‑1 (MQ=255)                                                                                                                 atcgtgggcgggcaccaacaccgccactcgcgggcgctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGt                                       <  6:237967‑M2/110‑1 (MQ=255)                                                                                                                     gCGGTGTTGGTGCGCGCGCACGAT‑‑GAGGCGATGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGGAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTTGCACGCGCGTCCGGTGc                                <  8:116193/149‑1 (MQ=255)                                                                                                                       ggTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGcc                               >  1:270558/1‑148 (MQ=255)                                                                                                                             ggTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTgg                        >  6:319628/1‑149 (MQ=255)                                                                                                                               tGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTgg                        >  4:246980/1‑147 (MQ=255)                                                                                                                               tGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTa                      <  7:141898/149‑1 (MQ=255)                                                                                                                                   cgcccACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAgc                  >  1:363892/1‑149 (MQ=255)                                                                                                                                      ccACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAgcgc                >  5:151685/1‑148 (MQ=255)                                                                                                                                            t‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATa         >  1:224869/1‑149 (MQ=255)                                                                                                                                                 ggcgctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATAcgc      >  4:191144‑M2/7‑149 (MQ=255)                                                                                                                                                  gcgctGGTAATTCTTGCGATGCTGCCCAGCGTTACGCCGCAACTGCTGGACGGCGCCCGCTTGCTGGTCGTGGCTGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATAcgcg     >  4:103419‑M2/6‑149 (MQ=255)                                                                                                                                                    gctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATACGCGCt   >  6:116384‑M2/4‑149 (MQ=255)                                                                                                                                                     ctGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATACGCGCtt  <  3:246980‑M2/147‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   TGGGCCTGTTGGCGATCATCGTCCTGGTACCGGTGTCGGTGCTGTTGCTGCAAGTGTTGCTGGCTTGCCTGCCGGCGCGGTCCAGGCCCAAGGGCATTGGCGAGCGCCCGCGAGTGGCGGTGTTGGTGCCCGCCCACGAT‑‑GAGGCGCTGGTCATTCGTGCGATGCTGGCCAGCGTTACGCCGCAACTGCTGGACGGCGACCGCTTGCTGGTCGTGGCAGACAACTGTTCGGATGACACGGCCCGGTTGGCACGCGCGTCCGGTGCCGAAGTGGTAGAGCGCCACGATACGCGCTT  >  NC_002947/3555609‑3555903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.