New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4093391	56 (0.930)	4 (0.070)	4/254	NT	7.9%	coding (388/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	= 4093458	40 (0.690)					coding (455/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase

GAGCGCGGCCGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGCCGACCTGGTCGCCTGCGCCATC  >  NC_002947/4093310‑4093606                                                                                                                                                     |                                                                                                                                                       gAGCGCGGCCGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGccc                                                                                                                                                        <  2:354033/149‑1 (MQ=255)        gCCGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGcc                                                                                                                                                 <  4:67641/149‑1 (MQ=255)         ccGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCg                                                                                                                                                <  8:82145/149‑1 (MQ=255)         ccGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCg                                                                                                                                                >  5:162288/1‑149 (MQ=255)               cAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCg                                                                                                                                          >  3:15234/1‑149 (MQ=255)                 gCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCGGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCggg                                                                                                                                        <  8:180232/149‑1 (MQ=255)                 gCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCggg                                                                                                                                        <  3:45172/149‑1 (MQ=255)                   gggCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGc                                                                                                                                      <  4:183348/149‑1 (MQ=255)                        gATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCa                                                                                                                                 <  1:160901/149‑1 (MQ=255)                            cgcCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGTGCCAGCCGCTGCCACGCGTTGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACt                                                                                                                              <  5:266308/148‑1 (MQ=255)                                    cGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCtt                                                                                                                     <  1:276118/148‑1 (MQ=255)                                     gCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCAGGTCGCAGTGTTCGGGGCCAGCAACTT‑CCCGCTTGc                                                                                                                   >  4:191463/1‑149 (MQ=255)                                        cAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCtt                                                                                                                <  7:226993/149‑1 (MQ=255)                                         aaGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCAGGTCGCCGTGTTCGGGGAAAGCAACTT‑CCCGCTTGCCTtc                                                                                                               >  6:235491/1‑149 (MQ=255)                                              ctgcGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCAc                                                                                                          <  5:91643/149‑1 (MQ=255)                                               tgcGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGc                                                                                                                                  <  1:296714/125‑1 (MQ=255)                                                 cgccgcGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCAcc                                                                                                         <  5:276393/147‑1 (MQ=255)                                                 agccgcGGCGACTTTCTCGGCGCACGAATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGACTTCGGCGACAGCAACTA‑CCCGCTTGCCTTCTCCAcc‑gc                                                                                                      >  5:380653/2‑149 (MQ=255)                                                   ccgcGGCAACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCGGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCAcc                                                                                                         <  6:283159/145‑1 (MQ=255)                                                   ccgcGGCAACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCAcc                                                                                                         >  5:283159/1‑145 (MQ=255)                                                      cggcgACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCgggg                                                                                                 <  4:142058/149‑1 (MQ=255)                                                      cggcgACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCgggg                                                                                                 <  4:330219/149‑1 (MQ=255)                                                             tttCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGCCCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATAc                                                                                          >  3:195173/1‑149 (MQ=255)                                                             tttCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGAACACGTAGCAGTCTTAAGCAACAAAAACAT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATAc                                                                                          >  4:304784/1‑149 (MQ=255)                                                                   ggCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATAccgccgc                                                                                    >  3:314486/1‑149 (MQ=255)                                                                       cacgcaTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCgccgccgcc                                                                                <  6:287577/149‑1 (MQ=255)                                                                       cacgcaTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCACTTGCCTTCTCCACC‑GCCGGGGGTGATACCgccgccgcc                                                                                <  8:188774/149‑1 (MQ=255)                                                                           caTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTTCCCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTg                                                                             <  1:268710/149‑1 (MQ=255)                                                                            aTCGTCCTGGCTCTGCCCGAGCGCCAGCCGCTGCCACGCGTAGTCCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGc                                                                           <  6:380653/149‑1 (MQ=255)                                                                            aTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCggtcgatgcgtgcgccgagaaagtcgccgcggcgcagcacttgggcgaacaggcgc                                                                                                <  2:138218‑M2/130‑57 (MQ=255)                                                                            aTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCggtcgatgcgtgcgccgagaaagtcgccgcggcgcagcacttgggcgaacaggcgc                                                                                                >  1:138218‑M2/1‑74 (MQ=255)                                                                            aTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGc                                                                           >  5:210768/1‑149 (MQ=255)                                                                            aTCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGc                                                                           >  5:278933/1‑149 (MQ=255)                                                                                 ccTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACCAGCCGGGGGTGATACCGCCGCCGCCCTGGCCGCa                                                                       <  1:46167/149‑1 (MQ=255)                                                                                    ggCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCt                                                                   >  3:143244/1‑149 (MQ=255)                                                                                     gCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGc                                                                    <  6:162288/147‑1 (MQ=255)                                                                                       aCTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCggtcgatgcgtgcgccgagaaa                                                                                                                                  <  5:320728‑M2/85‑23 (MQ=255)                                                                                       aCTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCggtcgatgcgtgcgccgagaaa                                                                                                                                  >  6:320728‑M2/1‑63 (MQ=255)                                                                                       aCTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGcc                                                                >  3:110096/1‑149 (MQ=255)                                                                                            ccGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCggtg                                                           >  3:235667/1‑149 (MQ=255)                                                                                                 cgcCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTAt                                                       <  4:143244/148‑1 (MQ=255)                                                                                                             ccACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGcaca                                           <  5:230935/148‑1 (MQ=255)                                                                                                                       aCCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATg                                <  3:276350/149‑1 (MQ=255)                                                                                                                              ccAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACgg                         <  4:235667/149‑1 (MQ=255)                                                                                                                               cAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGc                        >  7:153805/1‑149 (MQ=255)                                                                                                                                        aTCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGTCCACGTCCGAGCTGGt               <  4:110096/149‑1 (MQ=255)                                                                                                                                           ggTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGCCGACCTGGTCGc            >  5:244452/1‑149 (MQ=255)                                                                                                                                             tgtAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGCCGACCTGGTCGCCt          <  5:235491/149‑1 (MQ=255)                                                                                                                                                     cGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGCCGACCTGGTCGCCTGCGCCATc  <  4:15234/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       GAGCGCGGCCGCACCAGCGGGCAGATGCGCCTGTTCGCCCAAGTGCTGCGCCGCGGCGACTTTCTCGGCGCACGCATCGACCTGGCACTGCCCGAGCGCCAGCCGCTGCCACGCGTAGACCTGCGCCAGATGCGCATCGGTGTAGGCCCGGTCGCCGTGTTCGGGGCCAGCAACTT‑CCCGCTTGCCTTCTCCACC‑GCCGGGGGTGATACCGCCGCCGCCCTGGCCGCAGGCTGCCCGGTGGTATTCAAGGCGCACAGCGGCCACATGGCCACGGCCGACCTGGTCGCCTGCGCCATC  >  NC_002947/4093310‑4093606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.