New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4099369 =	53 (0.880)	4 (0.070)	4/252	NT	7.9%	coding (649/1215 nt)	PP_3607	membrane protein
	?	NC_002947	4099406 =	43 (0.750)					coding (612/1215 nt)	PP_3607	membrane protein

CCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGCCGAT  >  NC_002947/4099261‑4099552                                                                                                                                                  |                                                                                                                                                   ccAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACg                                                                                                                                                 <  4:147532/149‑1 (MQ=255)     cgcCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTgg                                                                                                                                             <  3:144742/149‑1 (MQ=255)       ccAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGcc                                                                                                                                           <  2:27379/149‑1 (MQ=255)         aaGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGcc                                                                                                                                           >  3:162617/1‑147 (MQ=255)          aGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAg                                                                                                                                        <  2:333600/149‑1 (MQ=255)               gcgTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGa                                                                                                                                    <  2:69974/148‑1 (MQ=255)               gcgTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAt                                                                                                                                   >  6:274871/1‑149 (MQ=255)                cgTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATc                                                                                                                                  <  8:27503/149‑1 (MQ=255)                 ttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCACTTCTCAAGCACCACg                                                                                                                                                 <  4:84160‑M1/41‑1 (MQ=255)                 ttccggccacctcgatcgtgcaggtgtgggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCACTTCTCAAGCACCACg                                                                                                                                                 >  3:84160‑M1/93‑133 (MQ=255)                        aGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGaa                                                                                                                          <  4:162617/149‑1 (MQ=255)                               ccAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGcc                                                                                                                   <  5:274871/149‑1 (MQ=255)                                  gggCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAgg                                                                                                                <  8:47991/149‑1 (MQ=255)                                     cGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCtt                                                                                                             <  3:25365/149‑1 (MQ=255)                                       aTGGCGCCCCACAGGAAGGGCCAGGGGCCACGCAGGATGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGAGCAGCCCGATCACTGCCAGGCTTGc                                                                                                           <  2:318351/149‑1 (MQ=255)                                       aTGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGc                                                                                                           <  5:118852/149‑1 (MQ=255)                                       aTGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGc                                                                                                           <  1:82473/149‑1 (MQ=255)                                       aTGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGc                                                                                                           <  2:18048/149‑1 (MQ=255)                                       aTGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGc                                                                                                           <  7:123743/149‑1 (MQ=255)                                          gcgcCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAg                                                                                                        >  3:350231/1‑149 (MQ=255)                                             ggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac                                                                                                                                                  <  6:26870‑M1/40‑1 (MQ=255)                                             ggggatagggcctgcggtgctggcaagcctggcagtgttcgggctgatcgcctgggccaccgtgGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGcaccac                                                                                                                                                  >  5:26870‑M1/65‑104 (MQ=255)                                             ccccACAGCAAGGGCCAGGGGCCACGCAGGAAGCTTCGAAGGCCTTGGTGCGCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCAc                                                                                                     <  8:335299/149‑1 (MQ=255)                                                     cAAGGGCCAGGGGCCACGCAGGAAGCGTCGACGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCACGCACCCCGGTGGCCCGGGCGATCCGCCCGAGCCCTGCCAGGCTTGCCCGCACCGCCgggc                                                                                             >  4:202348/1‑147 (MQ=255)                                                     cAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGcc                                                                                             <  4:5427/149‑1 (MQ=255)                                                     cAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGcc                                                                                             <  2:97915/149‑1 (MQ=255)                                                      aaGGGCCATGGGCCAAGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCACCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGcc                                                                                             <  4:60809/148‑1 (MQ=255)                                                          gCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCGCCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATc                                                                                        >  7:197630/1‑149 (MQ=255)                                                           ccAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATcc                                                                                       <  6:352742/149‑1 (MQ=255)                                                              ggggCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATccccc                                                                                    >  7:293727/1‑149 (MQ=255)                                                               gggCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCca                                                                                   >  1:44220/1‑149 (MQ=255)                                                                    aCGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCt                                                                              >  5:165426/1‑149 (MQ=255)                                                                      gCAGGAAGCGGCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCCTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGc                                                                            <  2:357383/149‑1 (MQ=255)                                                                          gAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACAccatgccga                                                                        >  1:359265/1‑142 (MQ=255)                                                                           aaGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGAt                                                                       >  4:110011/1‑149 (MQ=255)                                                                            aGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATc                                                                      <  8:293727/149‑1 (MQ=255)                                                                               gTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAg                                                                   <  5:344574/149‑1 (MQ=255)                                                                                      gCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCg                                                            <  3:284477/149‑1 (MQ=255)                                                                                        cTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGc                                                                                                                    >  4:75955/1‑91 (MQ=255)                                                                                        cTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGc                                                                                                                    <  3:75955/91‑1 (MQ=255)                                                                                                      gcaggcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACggcaagg                                             <  3:202348/148‑1 (MQ=255)                                                                                                        aggcagTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACggcaaggca                                           >  8:42635/1‑148 (MQ=255)                                                                                                         cgtggtgcttgagaagtgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGaa                                                         <  4:84160‑M2/92‑1 (MQ=255)                                                                                                         cgtggtgcttgagaagtgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGaa                                                         >  3:84160‑M2/42‑133 (MQ=255)                                                                                                          gtggtgcttgagaagcgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATcccc                                                                                     >  5:26870‑M2/41‑104 (MQ=255)                                                                                                          gtggtgcttgagaagcgccggcatggcgcgcttgaagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATcccc                                                                                     <  6:26870‑M2/64‑1 (MQ=255)                                                                                                                           ccATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCAtggtg                       <  1:280577/149‑1 (MQ=255)                                                                                                                           ccATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCAtggtg                       <  8:199286/149‑1 (MQ=255)                                                                                                                                ccGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATggtgggtg                   <  8:138371/148‑1 (MQ=255)                                                                                                                                ccGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATggtgggtg                   <  2:44220/148‑1 (MQ=255)                                                                                                                                    cgcTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCt              <  7:42635/149‑1 (MQ=255)                                                                                                                                     gcTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCt              >  4:90613/1‑148 (MQ=255)                                                                                                                                         ctcAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGAc           <  3:171170/147‑1 (MQ=255)                                                                                                                                           cAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAg       >  8:150639/1‑149 (MQ=255)                                                                                                                                            aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGa            <  8:243033‑M2/137‑1 (MQ=255)                                                                                                                                            aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGa            >  7:243033‑M2/7‑143 (MQ=255)                                                                                                                                            aagcacCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAACGCCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGc      >  7:172835‑M2/7‑149 (MQ=255)                                                                                                                                                acCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGCCGAt  <  3:157147‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CCAGCGCCAAGGTCGCGTAGTTCAGCAAGGCCAGGGCGATGGCGCCCCACAGCAAGGGCCAGGGGCCACGCAGGAAGCGTCGAAGGCCTTGGTGCTCGCTGGCAGGCAGTGCTTCAAGCGCGCCATGCCGGCGCTTCTCAAGCACCACGGTGGCCCAGGCGATCAGCCCGAACACTGCCAGGCTTGCCAGCACCGCAGGCCCTATCCCCCACACCTGCACGATCGAGGTGGCCGGAAGCGACGGCAAGGCAAACCACCAATCGGCATGGTGGGTGGCGCTGACCGAGCCGAT  >  NC_002947/4099261‑4099552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.