| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4537549 = | NA (NA) | 15 (0.260) | 6/254 | NT | 69.0% | coding (884/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626656 | 7 (0.120) | coding (848/1533 nt) | PP_4091 | transposase | |||||
GACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATCGCAATGGATCACCGGGCTTTCCAGCAGGCG > NC_002947/4626508‑4626804 | gacgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGG < 5:186841‑M2/149‑1 (MQ=255) acgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggt > 2:77856/1‑149 (MQ=32) cgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg < 3:261488/149‑1 (MQ=32) cgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTACTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg > 4:366956/1‑149 (MQ=17) gaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGACTAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg < 1:77856/149‑1 (MQ=17) aCGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt > 8:54733/1‑149 (MQ=32) cGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGTCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt < 6:342411/148‑1 (MQ=17) cGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATc > 5:143860/1‑149 (MQ=32) gCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATc > 8:296241/1‑148 (MQ=32) gCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATc > 7:260204/1‑148 (MQ=32) cGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGa > 2:124003/1‑148 (MQ=32) aaCATGCGCCATGAACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGaa > 6:54492/1‑147 (MQ=11) gCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGtgggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaat < 6:322952‑M2/149‑109 (MQ=255) cccTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgtggaacgactggcgtgcatggcgcatgtccggcgta < 4:195160‑M2/148‑109 (MQ=255) ccTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatgtcgcatgtccggcgtaaa < 2:125445‑M2/149‑111 (MQ=255) ccTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattc < 7:225759‑M2/149‑111 (MQ=255) ccTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattc < 5:350345‑M2/149‑111 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggcgtaaatt < 5:121731‑M2/149‑113 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggcgtaaatt < 5:116455‑M2/149‑113 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagcagggcgttgaacgactggcgtgcatggcgcatgttcggcgtaaattcgt < 4:86943‑M2/149‑113 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgatta < 1:74468‑M2/71‑35 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgatta > 2:74468‑M2/1‑37 (MQ=255) ccAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtc < 6:367267‑M2/149‑114 (MQ=255) agcagGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatga > 8:9593‑M2/1‑34 (MQ=255) agcagGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatga < 7:9593‑M2/68‑35 (MQ=255) gcagGCGCAGCGGCACCTCCTGCGCGCGGCTGGtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggcgtaaattcgtc < 5:115850‑M2/149‑117 (MQ=255) gcagGCGCAGCGGCACCTCCTGCGCGCGGCTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggcgtaaattcgtcg < 1:91252‑M2/147‑115 (MQ=255) cTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaaga > 3:327574‑M2/1‑4 (MQ=255) cTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaaga > 7:292813‑M2/1‑4 (MQ=255) tGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagc < 4:237117‑M2/149‑147 (MQ=255) tGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagc < 5:189926‑M2/149‑147 (MQ=255) tGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagg > 3:335230‑M2/1‑3 (MQ=255) tGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagg < 4:335230‑M2/141‑139 (MQ=255) tGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattagtcgaagcgcagaaggtgcagcctaagggcaagagc < 5:288906‑M2/149‑147 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcgg > 4:189062‑M2/1‑1 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcgg > 7:104891‑M2/1‑1 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 6:165549‑M2/1‑1 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 3:237117‑M2/1‑1 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 2:338281‑M2/1‑1 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaaga < 7:312685‑M2/145‑145 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaaga > 8:312685‑M2/1‑1 (MQ=255) | GACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATCGCAATGGATCACCGGGCTTTCCAGCAGGCG > NC_002947/4626508‑4626804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |