New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5207127 | 49 (0.810) | 4 (0.070) | 4/254 | NT | 7.7% | coding (59/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
? | NC_002947 | = 5207157 | 49 (0.850) | coding (89/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
GTCAGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGC > NC_002947/5207011‑5207302 | gTCAGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt > 5:336507/1‑147 (MQ=255) tcggTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCa < 6:130044/145‑1 (MQ=255) tCAGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcag > 6:209008‑M2/1‑146 (MQ=255) cAGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagc > 4:55705‑M2/1‑145 (MQ=255) aGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCGATCAACGAGCAGTTCATCAACCGCTGGTCGACACGCGCCTTCACCGCCGAGCCGATcagc > 3:228279‑M2/1‑144 (MQ=255) tCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagcg < 8:84573‑M2/147‑6 (MQ=255) gACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGaaa > 8:30924/1‑149 (MQ=255) gCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCct < 5:336962/149‑1 (MQ=255) cGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCctgct < 7:178080/149‑1 (MQ=255) gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCg > 6:92486/1‑147 (MQ=255) ttCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgc < 6:336507/147‑1 (MQ=255) ccgtccgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgccgcc < 4:296396/148‑1 (MQ=255) ccgtccgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGccgccc > 5:311086/1‑149 (MQ=255) tccgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATTAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCt > 7:154604/1‑149 (MQ=255) cgtTCGCAGGAGCCTCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCACTTCAACAACCGCTGGTCGACACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTCAGCTTCATCGAAACCGCCCGCTgt > 8:317010/1‑148 (MQ=255) cgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTgg < 3:334659/149‑1 (MQ=255) gtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTggg > 5:212346/1‑149 (MQ=255) cAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCTGTTCATCAACCGCTGGTCGCCACGCGCCTTCACAGCCGAGCCGATCAGCGAAGAAACCGTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCt > 7:128875/1‑149 (MQ=255) ggAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTc < 4:349093/149‑1 (MQ=255) gccgccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc < 6:311086/149‑1 (MQ=255) ccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTCGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat < 3:368957/149‑1 (MQ=255) cgcCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCg > 5:321251/1‑148 (MQ=255) cAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGc > 3:87457/1‑149 (MQ=255) aaCCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGTAGCCGCCCGCTGGGCACCTTCGGCCtat < 1:214164/138‑1 (MQ=255) aaCCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat > 2:214164/1‑138 (MQ=255) cccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTgg > 4:186871/1‑149 (MQ=255) cccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTgg < 6:90838/149‑1 (MQ=255) ccGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCtt > 4:97367/1‑149 (MQ=255) aTTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATTAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAt < 8:154604/149‑1 (MQ=255) aTTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAt < 7:84573/149‑1 (MQ=255) cGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGccc > 8:200051/1‑149 (MQ=255) cATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCccgcc > 3:360838/1‑149 (MQ=255) cATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTGCCTTTATGCccgcc > 8:226341/1‑149 (MQ=255) gAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGacac < 1:305987/149‑1 (MQ=255) gCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCCGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc < 6:8252/102‑1 (MQ=255) gCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCAGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc > 5:8252/1‑102 (MQ=255) cAGTTGATCAACGTCTGGTCGCCACGGGCCTTCACGGCCGAGCCGATCAGCGAAGATACCCTGCTGAGCTTCCTCGAATCCGCCCGCTGGGCACCTTCGGCCTATATCTCGCAGCCTTGGCGCTTCCTTTATTCGCGCCGCGACACGcc < 8:128875/149‑1 (MQ=255) ttCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGATTCCTTTATGCCAGCCGCGACACGccca > 4:219003/1‑146 (MQ=255) atcaACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTgg < 2:276986/84‑1 (MQ=255) atcaACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTgg > 1:276986/1‑84 (MQ=255) tcaACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagcggttgatgaactgctcgttgatggcgtaatcggcaatgcgggggttggcgctcatggcggctcctgcgaacggacgggaaaagcgcacgctactgcgtgccgtcg < 3:264098‑M2/149‑110 (MQ=255) caACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagcggttgatgaactgctcgttgatggcgtaatcggcaatgcgggggttggcgctcatggcggctcctgcgaacggacggg < 6:316166‑M2/121‑83 (MQ=255) caACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagcggttgatgaactgctcgttgatggcgtaatcggcaatgcgggggttggcgctcatggcggctcctgcgaacggacggg > 5:316166‑M2/1‑39 (MQ=255) caACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTggg < 5:52772/149‑1 (MQ=255) caACCGCTGGGCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTggg < 5:58155/149‑1 (MQ=255) aaCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg > 1:164684/1‑147 (MQ=255) aaCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg > 3:136313/1‑147 (MQ=255) aaCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg > 7:255675/1‑147 (MQ=255) aCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAg > 1:97185/1‑149 (MQ=255) ccGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATcagcggttgatgaactgctcgttgatggcgtaatcggcaatgcgggggttggcgctcatggcggctcctgcgaacggacgggaaaagcgcacgctactgcgtgccgtcgcgac < 3:5334‑M2/149‑114 (MQ=255) ccGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGc < 2:164684/149‑1 (MQ=255) ccGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGc > 2:225643/1‑149 (MQ=255) gTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTAcc < 6:321251/149‑1 (MQ=255) aCGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGcc > 1:342092/1‑149 (MQ=255) cACCTCCGATGCGATCATCGAAGTAACCATGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTTGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTg < 3:219003/148‑1 (MQ=255) ccgccgAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCGGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGccc < 5:92486/149‑1 (MQ=255) cgccgAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACCCGCCGAACTGGGCGCGTTCCCTGAGCCTGCTGGGGCCCt > 8:29439/1‑149 (MQ=255) cgccgAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCt < 2:97185/149‑1 (MQ=255) gagccgaTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCaa > 6:363815/1‑149 (MQ=255) cgaTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGc < 4:87457/149‑1 (MQ=255) | GTCAGTCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGC > NC_002947/5207011‑5207302 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |