New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5914157 =	29 (0.480)	4 (0.080)	4/208	NT	18.7%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914253 =	12 (0.250)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

CCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACG  >  NC_002947/5914160‑5914396                                                                                              |                                                                                                                                                 CCTCTTCGCGGGCACGCCCGCTCCCGCAGGGGTATTTCGAAGGCTGAAGCCTGGGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAgggg                                                                                                                                  <  1:96103‑M1/110‑1 (MQ=255)   TCTTCGCGGTCACGCCCGCTCCCCCAGGTAAATTTCGAAGTCTGACGCCTGTGACTTACCTGTGGTTGCGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTc                                                                                                                  >  6:287155‑M1/1‑124 (MQ=255)   TCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTc                                                                                                                  <  5:287155‑M1/124‑1 (MQ=255)                gcccgctcccataggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgagcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGcgccgc                                                                           >  2:302890‑M2/79‑149 (MQ=255)                GCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGcgccgc                                                                           <  7:149686‑M1/149‑1 (MQ=255)                GCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGcgccgc                                                                           <  7:335447‑M1/149‑1 (MQ=255)                  CCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAATCCCGCGccgccg                                                                         <  8:271397‑M1/149‑1 (MQ=255)                  CCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGccgccg                                                                         <  6:235007‑M1/149‑1 (MQ=255)                    GCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCgg                                                                        <  1:360241‑M1/148‑1 (MQ=255)                    GCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCgg                                                                        <  1:251678‑M1/148‑1 (MQ=255)                      tcccacaggtaagtaacaggcttcagcattcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAg                                                                     >  1:310029‑M2/73‑149 (MQ=255)                       cccacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGc                                                                    >  1:36789‑M2/72‑149 (MQ=255)                        ccacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGcc                                                                   >  8:328926‑M2/71‑149 (MQ=255)                         CGCAGGTTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGTGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACa                                                                                           >  2:129125‑M1/1‑124 (MQ=255)                         CGCAGGTTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACa                                                                                           <  1:129125‑M1/124‑1 (MQ=255)                         CGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCg                                                                  <  7:143630‑M1/149‑1 (MQ=255)                         CGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCg                                                                  <  2:54214‑M1/149‑1 (MQ=255)                               gTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCAc                                                            <  7:271397/149‑1 (MQ=255)                                   tttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCa                                                        >  6:108775/1‑149 (MQ=255)                                   tttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCa                                                        >  1:20869/1‑149 (MQ=255)                                        aaGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTgc                                                                                                           <  2:359589/94‑1 (MQ=255)                                        aaGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTgc                                                                                                           >  1:359589/1‑94 (MQ=255)                                         aGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgc                                                  <  8:143630/149‑1 (MQ=255)                                            cTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgcgc                                                >  2:136929/1‑148 (MQ=255)                                             tGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTa                                                                                                    <  3:35240/96‑1 (MQ=255)                                             tGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTa                                                                                                    >  4:35240/1‑96 (MQ=255)                                                    tgtgACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCcgcg                                       >  5:311724/1‑149 (MQ=255)                                                         cTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTcgc                                  <  5:235007/149‑1 (MQ=255)                                                            aCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCgg                                <  8:335447/148‑1 (MQ=255)                                                              cTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAc                             >  8:351670/1‑149 (MQ=255)                                                                 cgggagcgagcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTTCCAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAc                             <  1:302890‑M2/118‑1 (MQ=255)                                                                  gggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagt                         <  2:36789‑M2/121‑1 (MQ=255)                                                                   ggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagt                         >  2:75749‑M2/28‑148 (MQ=255)                                                                   ggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagt                         <  1:75749‑M2/121‑1 (MQ=255)                                                                     agcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcg                      >  8:62206‑M2/26‑149 (MQ=255)                                                                          gcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcgcagtg                 >  2:222115‑M2/21‑149 (MQ=255)                                                                          gcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcgcagtg                 >  5:324646‑M2/21‑149 (MQ=255)                                                                           cgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcgcagtgc                >  8:112054‑M2/20‑149 (MQ=255)                                                                             tgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCagtgcgcagtgcgc              <  2:310029‑M2/132‑1 (MQ=255)                                                                               cccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGcgcg             >  8:346764‑M2/16‑148 (MQ=255)                                                                                ccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTa           <  2:20869‑M2/135‑1 (MQ=255)                                                                                  gcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGt         >  7:172337‑M2/13‑149 (MQ=255)                                                                                         gggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACg  <  2:71629‑M2/144‑1 (MQ=255)                                                                                          ggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACg  >  5:352608‑M2/5‑148 (MQ=255)                                                                                           gcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGaa                              >  5:52549‑M2/4‑119 (MQ=255)                                                                                           gcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGaa                              <  6:52549‑M2/116‑1 (MQ=255)                                                                                              |                                                                                                                                                 CCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTG‑TACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACG  >  NC_002947/5914160‑5914396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.