New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3383565	43 (1.260)	31 (0.910)	28/290	0.3	58.5%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4950858	1 (0.030)					intergenic (‑8/+149)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK

ATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383423‑3383565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCATGCACAAGAGCGA  <  NC_002947/4950858‑4950717                                                                                                                                                                                                                                                                                               ATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATT                                                                                                                                           <  2:158226/148‑1  TAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTTCTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTG                                                                                                                                          >  3:71638/1‑148            CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAA                                                                                                                                <  4:177323/148‑1            CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGC                                                                                                                                   >  2:190081/1‑145                 TCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGC                                                                                                                            <  4:69934/147‑1                    ATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAA                                                                                                                         <  7:180065/147‑1                    ATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAA                                                                                                                         <  6:79174/147‑1                    ATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAA                                                                                                                         <  5:121723/147‑1                               AAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGAC                                                                                                             >  1:18805/1‑148                                      TGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCA                                                                                                      <  1:25511/148‑1                                           GCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCTTGACCCCTTATTGGCATGGCGAAGAGCGAGGCAGTCAAAGACCCCGCCACTAAA                                                                                                 <  7:128999/148‑1                                                   GTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAAC                                                                                          >  2:4538/1‑147                                                                  tGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCT                                                                          <  1:4538/147‑1                                                                        TAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGT                                                                    >  2:42126/1‑148                                                                          ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCG                                                                  >  4:97423/1‑148                                                                                   TTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGT                                                         <  7:108720/148‑1                                                                                        ATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTG                                                    >  7:175893/1‑148                                                                                         TACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGG                                                   <  2:18805/148‑1                                                                                            AATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGA                                                >  5:44734/1‑148                                                                                              TAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATC                                              >  4:93401/1‑148                                                                                                 CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGC                                           >  8:151391/1‑148                                                                                                          CGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGGCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTG                                  <  5:60768/148‑1                                                                                                           GAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGG                                 <  8:175893/148‑1                                                                                                             ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGC                               <  2:177327/148‑1                                                                                                                  CTAATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTAC                          >  2:32516/1‑148                                                                                                                     ATTTTTGCCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTG                       >  8:20767/1‑148                                                                                                                            CCTTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGACGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCAT                 <  4:59510/147‑1                                                                                                                              TTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCAT              <  4:93007/148‑1                                                                                                                              TTATCTCGGCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCAT              <  4:90066/148‑1                                                                                                                                      GCATGACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCATGCAC          <  3:97423/144‑1                                                                                                                                          GACCCCTTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCATGCACAAGAGCGA  <  2:5511/148‑1                                                                                                                                                                                                                                                                                               ATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383423‑3383565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATTGGCATGGCGAAGAGCGAAGCAGTCAAAGACCCCGCCACTAAAGGCAAACTCAAGCTGATCCTGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCTTTCGGTGGGCGCTACCTGGTTCATCATGCACAAGAGCGA  <  NC_002947/4950858‑4950717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.