New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5045679 | 0 (0.000) | 51 (1.510) | 42/286 | 0.0 | 100% | intergenic (‑46/+47) | PP_4449/PP_5682 | hypothetical protein/hypothetical protein |
? | NC_002947 | 5222582 = | NA (NA) | coding (8/840 nt) | PP_4602 | AraC family transcriptional regulator |
AGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA > NC_002947/5222444‑5222710 | aGCGATACGCCGGCGAGCAGGGCCTCGAGGGGGCCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaac < 5:54809/148‑1 (MQ=255) aTACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCATGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACaaaa < 8:5626/148‑1 (MQ=255) aTACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACaaaa < 7:113324/148‑1 (MQ=255) gCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGAt < 5:153878/147‑1 (MQ=255) cTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc < 5:52015/148‑1 (MQ=255) tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttcttt > 3:51613/1‑146 (MQ=255) aGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa < 1:79875/146‑1 (MQ=255) aGGGGGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTGCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa < 5:82015/146‑1 (MQ=255) gcggTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAg < 1:180241/148‑1 (MQ=255) cggTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg < 8:16553/148‑1 (MQ=255) tGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGcgcgcg < 5:92914/148‑1 (MQ=255) gggACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCaa > 3:147022/1‑148 (MQ=255) gggACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCaa < 3:75214/148‑1 (MQ=255) aCTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTCTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGAGCGCGGGGTCAATgg > 5:33732/1‑148 (MQ=255) tGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcg > 1:128190/1‑148 (MQ=255) gTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcgg > 4:47988/1‑147 (MQ=255) gTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcgg > 3:146060/1‑147 (MQ=255) gTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcgg > 1:186156/1‑147 (MQ=255) agGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCAGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGaa < 1:103182/147‑1 (MQ=255) ggTTGCCATGGGGGGGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCTCTTGTATCAAACAAAAGATAACCCACGGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgtg < 5:44824/148‑1 (MQ=21) cAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCAct > 3:51684/1‑148 (MQ=255) ggggggTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActct > 3:17447/1‑148 (MQ=255) ggggggTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACAGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActct > 8:51535/1‑148 (MQ=255) gTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTgg > 5:63670/1‑148 (MQ=255) gTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAg > 3:133725/1‑147 (MQ=255) tCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATACCCCACTGTTCTTTCTTGCGAAAAAAACAGTCGCGCGGGGTCAATGGCGGCGAAGTGTTCCCTCTTCTATACGTGGTCACAg > 4:108400/1‑146 (MQ=255) ggTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAg < 1:186759/148‑1 (MQ=255) tctGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtgtg > 3:89765/1‑148 (MQ=255) gctggctgGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtgtg < 6:63670/145‑1 (MQ=255) ggccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAAc < 3:47988/148‑1 (MQ=32) ccTCTTCGCGGGTGTACCCGCTTCTATAAAACAAAAGATAAACCACTGTTCTTTCTAGCGAAAAAAACAGGCTCGCGGTGTAATTGGCGGCGAAGTTTTAACTCTTCTATACGTTGTCACAGCAAGCTGT‑‑‑GACAGGGATTAAcgacga < 6:33732/148‑1 (MQ=11) | AGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA > NC_002947/5222444‑5222710 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |