| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 572584 = | 72 (1.160) | 4 (0.070) | 4/258 | NT | 5.2% | coding (506/1425 nt) | PP_0486 | GntR family transcriptional regulator |
| ? | NC_002947 | 572614 = | 75 (1.250) | coding (476/1425 nt) | PP_0486 | GntR family transcriptional regulator | |||||
AGCCCAACGACGCTCACATGAGCGAGTGGCTAGGCACGGCTATCAGCGAACTGGCCGCCTCATCGGACTTGGGGCAGGTACTCGACTATGTGACAGAGGGTGGTCACACGTCCCACAAACAAGCCGGTGCGACCTGGATACAGCGCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/572734‑572584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGCCAGTTCGCTGATAGCCGTGCCTAGCCACTCGCTCATGTGAGCGTCGTTGGGCTTGATGATCGAGAGGTCGATCTGGC > NC_002947/572614‑572758 AGCCCAACGACGCTCACATGAGCGAGTGGCTAGGCACGGCTATCAGCGAACTGGCCGCCTCATCGGACTTGGGGCAGGTACTCGACTATGTGACAGAGGGTGGTCACACGTCCCACAAACAAGCCGGTGCGACCTGGATACAGCGCTGG > 4:63291/1‑149 ACAAACAAGCCGGTGCGACCTGGATACAGCGCTGGCTTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGCCAGTTCGCTGATAGCCGTGCCTAGCCACTCGCTCATGTGAGCGT > 4:85617/1‑149 AAGCCGGTGCGACCTGGATACAGCGCTGGCTTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGC < 7:202466/99‑1 AAGCCGGTGCGACCTGGATACAGCGCTGGCTTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGC > 8:202466/1‑99 CAGCGCTGGCTTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGCCAGTTCGCTGATAGCCGTGCCTAGCCACTCGCTCATGTGAGCGTCGTTGGGCTTGATGATCGAGAGGTCG < 3:85617/149‑1 GGCTTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGCCAGTTCGCTGATAGCCGTGCCTAGCCACTCGCTCATGTGAGCGTCGTTGGGCTTGATGATCGAGAGGTCGATCTGGC < 4:296900/149‑1 AGCCCAACGACGCTCACATGAGCGAGTGGCTAGGCACGGCTATCAGCGAACTGGCCGCCTCATCGGACTTGGGGCAGGTACTCGACTATGTGACAGAGGGTGGTCACACGTCCCACAAACAAGCCGGTGCGACCTGGATACAGCGCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/572734‑572584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTGTTTGTGGGACGTGTGACCACCCTCTGTCACATAGTCGAGTACCTGCCCCAAGTCCGATGAGGCGGCCAGTTCGCTGATAGCCGTGCCTAGCCACTCGCTCATGTGAGCGTCGTTGGGCTTGATGATCGAGAGGTCGATCTGGC > NC_002947/572614‑572758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |