| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 620271 = | 68 (1.100) | 5 (0.090) | 5/252 | NT | 6.8% | coding (419/693 nt) | PP_0534 | transcriptional regulator PfeR |
| ? | NC_002947 | 620322 = | 72 (1.230) | coding (368/693 nt) | PP_0534 | transcriptional regulator PfeR | |||||
ATCAGCGGCTTCACCCGTGGTGCAGACGACTACCTGCCCAAGCCCTTCAGCCTGGCGGAGCTGGACGCACGGGTGGATGCCTTGCTGCGTCGCGTGGCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/620425‑620271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacgaTCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCA > NC_002947/620322‑620469 ATCAGCGGCTTCACCCGTGGTGCAGACGACTACCTGCCCAAGCCCTTCAGCCTGGCGGAGCTGGACGCACGGGTGGATGCCTTGCTGCGTCGCGTGGCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGA < 1:327004/149‑1ATCAGCGGCTTCACCCGTGGTGCAGACGACTACCTGCCCAAGCCCTTCAGCCTGGCGGAGCTGGACGCACGGGTGGATGCCTTGCTGCGTCGCGTGGCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGA > 2:327004/1‑149ATCAGCGGCTTCACCCGTGGTGCAGACGACTACCTGCCCAAGCCCTTCAGCCTGGCGGAGCTGGACGCACGGGTGGATGCCTTGCTGCGTCGCGTGGCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGA > 2:74263/1‑149 GCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGACCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGG > 5:105432/1‑149 ATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGC > 3:361688/1‑149 TCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCC > 6:284868/1‑149 CGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGC < 5:284868/149‑1 GAGGTGATGCTGGACCACGACCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGTCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCC < 6:105432/149‑1 CACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACa > 7:308217/1‑148 CACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACC > 2:226302/1‑149 CACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGA < 8:308217/147‑1 ACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCG > 2:127225/1‑149 ACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTG > 1:75077/1‑131 ACGATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTG < 2:75077/131‑1 GATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGG > 7:217239/1‑148 ATCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCA > 8:348235/1‑149 ATCAGCGGCTTCACCCGTGGTGCAGACGACTACCTGCCCAAGCCCTTCAGCCTGGCGGAGCTGGACGCACGGGTGGATGCCTTGCTGCGTCGCGTGGCATTCGATCGTGGTACGGCGCTGCGTGCCGACGTGGGGGAGGTGATGCTGGACCACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/620425‑620271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacgaTCGAATGCCACGCGACGCAGCAAGGCATCCACCCGTGCGTCCAGCTCCGCCAGGCTGAAGGGCTTGGGCAGGTAGTCGTCTGCACCACGGGTGAAGCCGCTGATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCA > NC_002947/620322‑620469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |