| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 906270 | 56 (0.900) | 7 (0.120) | 7/254 | NT | 10.4% | coding (281/573 nt) | ampD | N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase |
| ? | NC_002947 | = 906325 | 67 (1.130) | coding (336/573 nt) | ampD | N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase | |||||
CCCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/906117‑906270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgttACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT < NC_002947/906325‑906180 CCCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTG < 4:100370/149‑1CCCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTG > 6:189795/1‑149CCCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTG < 6:254960/149‑1 CCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGT > 3:170578/1‑149 CCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAAACGCCTGGCCACTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACATGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTC > 1:368109/1‑149 GCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT < 2:292760/149‑1 TCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCACACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCC > 4:279483/1‑149 CCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGT > 8:100791/1‑149 CCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCTCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACA < 3:279483/149‑1 CCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACAC < 7:100791/149‑1 TATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAA < 7:17422/149‑1 CAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAAC > 5:351213/1‑142 CAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAAC < 6:351213/142‑1 GTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGT > 2:135954/1‑149 CGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGT > 8:100121/1‑149 GTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT > 6:139264/1‑149 GTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT > 5:189795/1‑149 GTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT > 4:254850/1‑149 CCCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/906117‑906270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgttACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT < NC_002947/906325‑906180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |