New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 948417	52 (0.840)	4 (0.070)	4/254	NT	7.6%	coding (894/1179 nt)	hmp	flavohemoprotein
	?	NC_002947	= 948454	47 (0.790)					coding (931/1179 nt)	hmp	flavohemoprotein

CGCCTGCGGGTGACTTCACCCTGGCAGCCAGCGACAAGCCGCTGGTGCTGATCAGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/948266‑948417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgCCGCCAGGCCATCGATCCAGTCCCGGAAGGCATGCACCGCGCCGTTACGC  <  NC_002947/948454‑948405                                                                                                                                                                                                            CGCCTGCGGGTGACTTCACCCTGGCAGCCAGCGACAAGCCGCTGGTGCTGATCAGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGC                                                       <  7:99688/149‑1  GCCTGCGGGTGACTTCACCCTGGCAGCCAGCGACAAGCCGCTGGTGCTGATCAGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTACATCCACTGTGCGCGTAACGGCG                                                      >  5:190185/1‑149                 CACCCTGGCAGCCAGCGACAAGCCGCTGGTGCTGATCAGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCGCCGCCAGGCCATt                                       >  2:139234/1‑148                                                      AGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCGCCGCCAGGCCATTGATCCAGTCCCGGAAGGCATGCACCGCGCCGTTACGC  <  1:139234/149‑1                                                                                             CAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCGCCGCCAGGCCATCGATCCAGTCCCGGAAGGCATGCACCGCGCCG        >  5:140433/1‑104                                                                                             CAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCGCCGCCAGGCCATCGATCCAGTCCCGGAAGGCATGCACCGCGCCG        <  6:140433/104‑1                                                                                                                                                                                                            CGCCTGCGGGTGACTTCACCCTGGCAGCCAGCGACAAGCCGCTGGTGCTGATCAGCGGAGGGGTGGGCATTACCCCGACCCTGGCGATGCTGCAGGCAGCACTGCAAACCCGGCGCGAGGTGCATTTCATCCACTGTGCGCGTAACGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/948266‑948417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgCCGCCAGGCCATCGATCCAGTCCCGGAAGGCATGCACCGCGCCGTTACGC  <  NC_002947/948454‑948405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.