New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 964518	52 (0.840)	3 (0.050)	3/256	NT	5.9%	coding (324/828 nt)	phnE	phosphonate ABC transporter permease
	?	NC_002947	= 964562	46 (0.770)					coding (368/828 nt)	phnE	phosphonate ABC transporter permease

GGCACATGATGCCGATTTTCTTGCACTGCTGTATGAAGCTACCTTGCAGACCCTGGCCGTGGCGACTGCCGGCATGGCGCTGGCGTTGTTGTTGGCGATCCCGGCTGGCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/964368‑964518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAGCAGCACGCAAGGACAAGGCACGGCTGGCCAGCAAGCCAGCCGGGATCGCCAACAACAACGCCAGCGCCATGCCGGCAGTCGCCACGGCCAGGG  <  NC_002947/964562‑964418                                                                                                                                                                                                                                                                                                          GGCACATGATGCCGATTTTCTTGCACTGCTGTATGAAGCTACCTTGCAGACCCTGGCCGTGGCGACTGCCGGCATGGCGCTGGCGTTGTTGTTGGCGATCCCGGCTGGCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCAC                                                                                                                                                     <  2:325392/149‑1    ACATGATGCCGATTTTCTTGCACTGCTGTATGAAGCTACCTTGCAGACCCTGGCCGTGGCGACTGCCGGCATGGCGCTGGCGTTGTTGTTGGCGATCCCGGCTGGCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGCA                                                                                                                                                  >  1:352988/1‑149                                                   CCCTGGCCGTGGCGACTGCCGGCATGGCGCTGGCGTTGTTGTTGGCGATCCCGGCTGGCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGT                                                                                                   <  2:352988/149‑1                                                                                                            GCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAG                                                                                               >  3:323700/1‑96                                                                                                            GCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAG                                                                                               <  4:323700/96‑1                                                                                                                                                   CACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAGCAGCACGCAAGGACAAGGCACGGCTGGTCAGCAAGCCAGCCGGGATCGCCAACAACAACGCCAGCGCCATGCCGGCAGTCGCCACGGCCAGG   <  5:166883/149‑1                                                                                                                                                    ACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAGCAGCACGCAAGGACAAGGCACGGCTGGCCAGCAAGCCAGCCGGGATCGCCAACAACAACGCCAGCGCCATGCCGGCAGTCGCCACGGCCAGGG  >  3:28043/1‑149                                                                                                                                                    ACGCACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAGCAGCACGCAAGGACAAGGCACGGCTGGCCAGCAAGCCAGCCGGGATCGCCAACAACAACGCCAGCGCCATGCCGGCAGTCGCCACGGCCAGGG  >  5:141475/1‑149                                                                                                                                                                                                                                                                                                          GGCACATGATGCCGATTTTCTTGCACTGCTGTATGAAGCTACCTTGCAGACCCTGGCCGTGGCGACTGCCGGCATGGCGCTGGCGTTGTTGTTGGCGATCCCGGCTGGCTTGCTGGCCAGCCGTGCCTTGTCCTTGCGTGCTGCTTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/964368‑964518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcACCGGCAGGCGCAACAGTCGCGACCAGAGCCCGGCCCGCCCGCCGCGTGAAGCAGCACGCAAGGACAAGGCACGGCTGGCCAGCAAGCCAGCCGGGATCGCCAACAACAACGCCAGCGCCATGCCGGCAGTCGCCACGGCCAGGG  <  NC_002947/964562‑964418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.