New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1249666 =	53 (0.850)	6 (0.100)	5/256	NT	9.8%	coding (563/624 nt)	bvgA	virulence factors transcription regulator BvgA
	?	NC_002947	1249703 =	60 (1.010)					coding (600/624 nt)	bvgA	virulence factors transcription regulator BvgA

TCGATTACGACCTGTAGTGCGGGTCCCGTAGTCATGGACCGATAGCCCTGGCAAAGCCTCCTGGCTGGAGGCTTCAAGGCTTGGCGATCAGTTCAGACCTTGCCGTTGCGCCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1249814‑1249666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagctGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGCGCCGTTCTTCC  >  NC_002947/1249703‑1249849                                                                                                                                                                                                                                                                                                          TCGATTACGACCTGTAGTGCGGGTCCCGTAGTCATGGACCGATAGCCCTGGCAAAGCCTCCTGGCTGGAGGCTTCAAGGCTTGGCGATCAGTTCAGACCTTGCCGTTGCGCCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGC                                                                                                                                                      <  4:105154/148‑1                                                                                                              GCCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAAT                                        >  2:58061/1‑149                                                                                                               CCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGCTCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATC                                       >  5:274451/1‑149                                                                                                               CCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATC                                       >  8:238892/1‑149                                                                                                                  GCTCGATCAGGTCAACCAATGACCGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGA                                     >  7:311683/1‑148                                                                                                                                       ACCGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCA                <  8:311683/148‑1                                                                                                                                         CGTGCATTGAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGC             <  1:58061/149‑1                                                                                                                                                 GAGCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGCGCCGTTC      <  7:160132/148‑1                                                                                                                                                   GCTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGCGCCGTTCTTC   <  1:244941/149‑1                                                                                                                                                   GCTGGCGCAACGGCAAAGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCTCTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGCGCCGTTCTTC   <  2:35585/149‑1                                                                                                                                                    CTGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTCCTGCAGGCGCCGTTCTTCC  <  4:117135/149‑1                                                                                                                                                                                                                                                                                                          TCGATTACGACCTGTAGTGCGGGTCCCGTAGTCATGGACCGATAGCCCTGGCAAAGCCTCCTGGCTGGAGGCTTCAAGGCTTGGCGATCAGTTCAGACCTTGCCGTTGCGCCAGCTCGATCAGGTCAACCAATGACCGTGCATTGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1249814‑1249666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagctGGCGCAACGGCAAGGTCTGAACTGATCGCCAAGCCTTGAAGCCTCCAGCCAGGAGGCTTTGCCAGGGCTATCGGTCCATGACTACGGGACCCGCACTACAGGTCGTAATCGAAATCGGCCAACTGCTTCTGCAGGCGCCGTTCTTCC  >  NC_002947/1249703‑1249849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.